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The map label for this gene is ydfL

Identifier: 16077613

GI number: 16077613

Start: 594186

End: 594998

Strand: Reverse

Name: ydfL

Synonym: BSU05460

Alternate gene names: 16077613

Gene position: 594998-594186 (Counterclockwise)

Preceding gene: 255767145

Following gene: 16077612

Centisome position: 14.11

GC content: 36.65

Gene sequence:

>813_bases
ATGAAGGAATTTTTTTCGATTGGAGAAGTGTCAAAGTTATTCAATGTGAAAATCTCTGCTCTTCGGTATTATGATGAAAT
CGGCCTTTTGAAACCGGAATATAAAGATGAGCAAACGAACTATAGATATTATTCTACCCAACAGTTTGAGCGGCTGGATA
CCATCAAGTATTTGAGGGCCCTAGGCCTGCCAATCAATAAGCTTCTTGATTTTTATAACTCTCAAAATACAAACACTCTT
CTTCATTTACTAAAAAGCCAGCAGGTTGAAATTGATCGCAAGAAGAAAGAATTGGAACGCATTGAACGAAAGATCTCCCG
ACGCATCACACATATAGAAGATGCCGTTAACATGCCGTTACATCAAATTTCAAAAATCAAACTTCCCGCAATGCGTGTGG
CCTATTTGCAGCATGAATATGTTCTCGGCCATGATATCGAACATTCGTTAGCTGAATTGAGAACCCACCTGAATGTAAAC
GAAGATATATTCATAGGCAAGATTGGTTTATCCATTTCTGCAGCAAATGTGAAAGCAAAACAGTTTGACAAATATTCCAG
TATATTTATGATTCTTGAAGATGAAAATGAAAAAACTTCTTCAGAAATCATCTTTCCTTCAAGAGAATATCTGCAAATTA
GGTTTAAAGGGTCACATCCAGAAGCCGAACCATACTACAAAAAATTACTGGCATATATGAAAGAACATCATTATGAGGTA
GCAGGGGACTCAATCGAAATCACACTCATTGATTATGGCATTACGAATAACCTAGATAATTACGTGACTGAAATCCTGCT
GCCCATCAAATAA

Upstream 100 bases:

>100_bases
TTTAGAAGGAGTTTTTTCTTTATGCTGCAAACTTTACCTTTAGTACTCGCCGTACTATATAATGTGTGTATATCAATCAT
AGGACAGAAAGGTTGTTAGA

Downstream 100 bases:

>100_bases
TCTCATGAATATGTTTTGATCTCCCTTGACTCTCTACTAACTAGAGGGTTTATTTTTTATGCAGGAATGATTTTTGGAGG
AGAAAGCTTATGTTTGGAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTL
LHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVN
EDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEV
AGDSIEITLIDYGITNNLDNYVTEILLPIK

Sequences:

>Translated_270_residues
MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTL
LHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVN
EDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEV
AGDSIEITLIDYGITNNLDNYVTEILLPIK
>Mature_270_residues
MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRALGLPINKLLDFYNSQNTNTL
LHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPLHQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVN
EDIFIGKIGLSISAANVKAKQFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEV
AGDSIEITLIDYGITNNLDNYVTEILLPIK

Specific function: Unknown

COG id: COG4978

COG function: function code KT; Transcriptional regulator, effector-binding domain/component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFL_BACSU (P96690)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   B69781
- RefSeq:   NP_388427.1
- ProteinModelPortal:   P96690
- SMR:   P96690
- EnsemblBacteria:   EBBACT00000000983
- GeneID:   938078
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05460
- NMPDR:   fig|224308.1.peg.546
- GenoList:   BSU05460
- GeneTree:   EBGT00050000001457
- HOGENOM:   HBG422396
- OMA:   GPYEETD
- ProtClustDB:   CLSK561017
- BioCyc:   BSUB:BSU05460-MONOMER
- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256
- SMART:   SM00871
- SMART:   SM00422

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR; SSF55136 Bac_reg_effector; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 31784; Mature: 31784

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS00552 HTH_MERR_1; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
LGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPL
HCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVNEDIFIGKIGLSISAANVKAK
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCHHH
QFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEV
HHHCCCEEEEEEECCCCCCCCEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE
AGDSIEITLIDYGITNNLDNYVTEILLPIK
CCCEEEEEEEECCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKEFFSIGEVSKLFNVKISALRYYDEIGLLKPEYKDEQTNYRYYSTQQFERLDTIKYLRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH
LGLPINKLLDFYNSQNTNTLLHLLKSQQVEIDRKKKELERIERKISRRITHIEDAVNMPL
HCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HQISKIKLPAMRVAYLQHEYVLGHDIEHSLAELRTHLNVNEDIFIGKIGLSISAANVKAK
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCHHH
QFDKYSSIFMILEDENEKTSSEIIFPSREYLQIRFKGSHPEAEPYYKKLLAYMKEHHYEV
HHHCCCEEEEEEECCCCCCCCEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE
AGDSIEITLIDYGITNNLDNYVTEILLPIK
CCCEEEEEEEECCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377