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The map label for this gene is ycnC

Identifier: 255767120

GI number: 255767120

Start: 437474

End: 438352

Strand: Reverse

Name: ycnC

Synonym: BSU03850

Alternate gene names: 255767120

Gene position: 438352-437474 (Counterclockwise)

Preceding gene: 16077454

Following gene: 16077452

Centisome position: 10.4

GC content: 45.73

Gene sequence:

>879_bases
ATGCTTGATAAAAAAACAGATATCTTGTTAGCCGCGCGAAAGCTTTTTTCGGAAAAGGATTTTACGTCGGTTTCCATGCA
GGCGATCGCAGAAGAATGTAAGATGTCAAAAGCTTCGATATATAAGCTGTTCCAATCTAAAGAAGATCTGCTTTTGGAGC
TGCTGTCATTTAACCAGAAGCAAATGGTGGCCGCGGCCTCAAGACTTCAGGAAAATACAGCACTTACACCGGAGGAGCGT
TTGACGCAAAAGGTCAAAATGGAACTGGAGGGCTTCAGGCGGAATCAGCAGTTTTTCAATATGCTGACCTACGGAAACCC
CAAGCTGCACAATGACCGGGTCAAACAGCATATCCATCAGACCAGATCGACGATTATCTGCTGGCACCGCGATTCGCTGA
TCCAGGCGTATGGAGAAACCATTCTCCCGTTTGTGTGGGATTTGGTTATCATTCTTCACGGCATGATGCGTGAGTTTTTA
ATGCTGATCAAAATCGAGGAAAAACCGCTTGAGCTTGACCCGATCGCAGAGTTTATCATCAGCACCCTCAATCAGATTAT
CAAAAACAGGGAAACCCGCCAGTCTCTTCTTCCGCCCGAAGCCATCGAGCTTTATATTCATTCAGCATCCTCCTACAAGC
CAAAGGATAAATCAGTCCTATTATCGGAAAGCCTGAAGGAATTACATAAAGGCATCTCTTCCCTGTCCGCCGCGGACTAT
GACGTAGATGAACTGACATCCGCAGCCGCTATGCTGGAGGAAGAAGCGAAGAAGGAAGAACCCCGCGCTTTTTTACTCAA
ATCACTGATTGGCTATCTGGAACAAACCGGTGTTTTAACACAGCCCGTTTCCATGTTAAAAACACTGTTAATTACTTAG

Upstream 100 bases:

>100_bases
CTTCTATTTTGTTTATCTGGTAAAATTTTTTCATTGTTACTCATTGGTTTTCTGTGAACCAATGGGTTTTCTAATGTTCA
AGAAAGAAGGAAGCCATGAG

Downstream 100 bases:

>100_bases
AGAAAAGAAGGGATATGTATTGAACACAAGTATTGAACAAAAACCTTTTAACCGTTCTGTCATTGTCGGCATTTTGTTAG
CCGGAGCGTTTGTGGCGATT

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQKQMVAAASRLQENTALTPEER
LTQKVKMELEGFRRNQQFFNMLTYGNPKLHNDRVKQHIHQTRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFL
MLIKIEEKPLELDPIAEFIISTLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKSVLLSESLKELHKGISSLSAADY
DVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQTGVLTQPVSMLKTLLIT

Sequences:

>Translated_292_residues
MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQKQMVAAASRLQENTALTPEER
LTQKVKMELEGFRRNQQFFNMLTYGNPKLHNDRVKQHIHQTRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFL
MLIKIEEKPLELDPIAEFIISTLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKSVLLSESLKELHKGISSLSAADY
DVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQTGVLTQPVSMLKTLLIT
>Mature_292_residues
MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQKQMVAAASRLQENTALTPEER
LTQKVKMELEGFRRNQQFFNMLTYGNPKLHNDRVKQHIHQTRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFL
MLIKIEEKPLELDPIAEFIISTLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKSVLLSESLKELHKGISSLSAADY
DVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQTGVLTQPVSMLKTLLIT

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCNC_BACSU (P94423)

Other databases:

- EMBL:   D50453
- EMBL:   AL009126
- PIR:   G69763
- RefSeq:   NP_388267.2
- ProteinModelPortal:   P94423
- SMR:   P94423
- EnsemblBacteria:   EBBACT00000003323
- GeneID:   938270
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU03850
- NMPDR:   fig|224308.1.peg.386
- GenoList:   BSU03850
- GeneTree:   EBGT00050000000417
- HOGENOM:   HBG338513
- ProtClustDB:   CLSK886703
- BioCyc:   BSUB:BSU03850-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 33518; Mature: 33518

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQK
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QMVAAASRLQENTALTPEERLTQKVKMELEGFRRNQQFFNMLTYGNPKLHNDRVKQHIHQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFLMLIKIEEKPLELDPIAEFII
HHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
STLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKSVLLSESLKELHKGISSLSAADY
HHHHHHHHCHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQTGVLTQPVSMLKTLLIT
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDKKTDILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQK
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QMVAAASRLQENTALTPEERLTQKVKMELEGFRRNQQFFNMLTYGNPKLHNDRVKQHIHQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TRSTIICWHRDSLIQAYGETILPFVWDLVIILHGMMREFLMLIKIEEKPLELDPIAEFII
HHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
STLNQIIKNRETRQSLLPPEAIELYIHSASSYKPKDKSVLLSESLKELHKGISSLSAADY
HHHHHHHHCHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
DVDELTSAAAMLEEEAKKEEPRAFLLKSLIGYLEQTGVLTQPVSMLKTLLIT
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377