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The map label for this gene is ycxC

Identifier: 255767109

GI number: 255767109

Start: 405069

End: 406007

Strand: Reverse

Name: ycxC

Synonym: BSU03550

Alternate gene names: 255767109

Gene position: 406007-405069 (Counterclockwise)

Preceding gene: 255767110

Following gene: 16077423

Centisome position: 9.63

GC content: 47.82

Gene sequence:

>939_bases
ATGGTTAAACATCAGCAAACCCCCGCTTATATAGCGGCTATTTTATATTCGTTCATTATCGGTTTATCCTTTCTATTCGT
AAAAATCGCACTGCAAACAGCAGAGCCGTTTGATATTTTGGCGCATCGGTTCACCATTGCGTTTGCTGCGGCCACTGTAC
CGATCTTATTCGGCTGGGTAAAGCTATCAATCCGCGTAAAGGACGTCATTGACATTTTGCCGCTCGCCCTGCTGTATCCC
GCGTTATTTTTCAGCTTTCAGGCATTCGGCCTTGTGTACTCGTCCTCCTCTGAAGCGGGAATTATTCAGGCAGCCATTCC
GATTTTCACGATGGTCTTTGCCGCTTATGTTTTAAAGGAACGCCCAACGTGGACGCAAAAGGGGTTCACGGTTTTATCCG
TTGCCGGCGTCATGTTTATTTTTGTGATGAAAGGCGTTGACGTGGAATCAGCCAGCTTAAAAGGGTCTTTGCTGATCCTA
TTGTCCGCTTTGTCTTCAGCGATGTACAATACTGCTGCCAGAAAAATGACGCAGCGGTTCAAGCTGACCGAGCTCACCTA
CATCATGTCAGCCATCGGCTTTGTCGTCTTCAACGCCATCGCCCTTGTGCGTCACGGAGCGGCGGGAACAGTCGGCACTT
ATTTTCTGCCGTTCCGGGAGCCCGGCTTCGTTCTCGCCATTGTGTATTTGGGCGTGCTGTCTTCACTTGTCACTTCATTT
CTGTCTAACTATACGCTGTCGCGAATTGAGGCGTTTAAAATGAGCGCTTTTAATCATGTATCTACCATTGTGACGATGAT
TGCAGGATTTGTGATTCTCAACGAAAGCCTGGCCTGGTATCATCTTGCCGGGGCTGTTTGTATTATGATTGGCGTGGTGG
GGAGCAATATCAATCTGGAGAAAAAAACAAAGCGCCCTGGTATGCCTGCAAAAAAATGA

Upstream 100 bases:

>100_bases
GGTACAGTTCATTGTTTTTCTCATTGTACCGTTCTGACCGCGGCCATACAATAAAGGGAGCGACCGGCGCTGCAATTCAG
GTAAAGGAGCCCTTCCCATT

Downstream 100 bases:

>100_bases
GAAATTATGCTAGACTAAAAGGAAAAACATGGTTAGAGGTGTAGGTTTACCGTATGATTCAATATGCTAGTGAAAGTATC
AATCTTCCAGGAGAAATCAC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRFTIAFAAATVPILFGWVKLSIRVKDVIDILPLALLYP
ALFFSFQAFGLVYSSSSEAGIIQAAIPIFTMVFAAYVLKERPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLIL
LSALSSAMYNTAARKMTQRFKLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYLGVLSSLVTSF
LSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVCIMIGVVGSNINLEKKTKRPGMPAKK

Sequences:

>Translated_312_residues
MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRFTIAFAAATVPILFGWVKLSIRVKDVIDILPLALLYP
ALFFSFQAFGLVYSSSSEAGIIQAAIPIFTMVFAAYVLKERPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLIL
LSALSSAMYNTAARKMTQRFKLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYLGVLSSLVTSF
LSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVCIMIGVVGSNINLEKKTKRPGMPAKK
>Mature_312_residues
MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRFTIAFAAATVPILFGWVKLSIRVKDVIDILPLALLYP
ALFFSFQAFGLVYSSSSEAGIIQAAIPIFTMVFAAYVLKERPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLIL
LSALSSAMYNTAARKMTQRFKLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYLGVLSSLVTSF
LSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVCIMIGVVGSNINLEKKTKRPGMPAKK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCXC_BACSU (Q08794)

Other databases:

- EMBL:   X70356
- EMBL:   D50453
- EMBL:   AL009126
- PIR:   I40491
- RefSeq:   NP_388237.2
- EnsemblBacteria:   EBBACT00000000640
- GeneID:   938297
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU03550
- NMPDR:   fig|224308.1.peg.356
- GenoList:   BSU03550
- GeneTree:   EBGT00070000032091
- HOGENOM:   HBG704497
- ProtClustDB:   CLSK2539609
- BioCyc:   BSUB:BSU03550-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 34089; Mature: 34089

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcef1278)-; HASH(0xbb74fe4)-; HASH(0xb1092cc)-; HASH(0xbbc3690)-; HASH(0xc40cd20)-; HASH(0xc3c4b68)-; HASH(0xcf25c94)-; HASH(0xc3c564c)-; HASH(0xc415888)-; HASH(0xb1bf520)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRFTIAFAAATVPILFGWV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLSIRVKDVIDILPLALLYPALFFSFQAFGLVYSSSSEAGIIQAAIPIFTMVFAAYVLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHC
RPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLILLSALSSAMYNTAARKMTQRF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYLGVLSSLVTSF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
LSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVCIMIGVVGSNINLE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
KKTKRPGMPAKK
HHCCCCCCCCCH
>Mature Secondary Structure
MVKHQQTPAYIAAILYSFIIGLSFLFVKIALQTAEPFDILAHRFTIAFAAATVPILFGWV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLSIRVKDVIDILPLALLYPALFFSFQAFGLVYSSSSEAGIIQAAIPIFTMVFAAYVLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHC
RPTWTQKGFTVLSVAGVMFIFVMKGVDVESASLKGSLLILLSALSSAMYNTAARKMTQRF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTELTYIMSAIGFVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYLGVLSSLVTSF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
LSNYTLSRIEAFKMSAFNHVSTIVTMIAGFVILNESLAWYHLAGAVCIMIGVVGSNINLE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
KKTKRPGMPAKK
HHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8355609; 8969502; 9384377