| Definition | Shewanella oneidensis MR-1, complete genome. |
|---|---|
| Accession | NC_004347 |
| Length | 4,969,803 |
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Identifier: 24374604
GI number:
Start: 3205035
End: 3209303
Strand: Direct
Name: Not Available
Synonym: SO_3084
Alternate gene names: NA
Gene position: NA
Preceding gene: 24374603
Following gene: 24374605
Centisome position: NA
GC content: NA
Gene sequence:
>4269_bases ATGCCGAAAGTACTCTTAAAAATTTTCATCTACAGTTGCCTATGCCTAAGCACCTTGTATCCATCAGATTCTATTGCAAT ATATTCTAAGGAGCTCGACTCATCCATAGTTTTGAATTCAAACCTATTTGGAGTTCCGCAAGGTCTTTCACAAGGAACAG TAACCTCGATTGTTCAAGATAATGATGGATACCTATGGATAGGTACATTTAATGGTCTTAATCGCTTTGATGGAAGCAAC TTCAAATATTTTTTCGCTGATGGAACAAATTCAGGACTCCCTAGCTCTTTTATTCGAAGTTTACAAATTGATAAGAATGG CATTCTATATGTAGGAACTGACAATGGCCTAGCTGTATATGATAAGAACAACGATTCCTTCATTAAATACGGAGCACCAC TAGACAACACTCCAATCTGGAGTATAAATACCACTATTGAAACCTTAATTGTTGGCACCAACAACGCAATCATTGACATC CATGGAAAAGAGAACCATCTAGACCTATCGTCTAAAGGGATTGGTGAAATAAAAAAATCTATCAAAATTGGTGATGATTA TTTTTTAAAGGATTACTCCGGAAAATTATTTAAAATAAATCAAGAAAGTTCAATCTTAATAAAAGAAAACATTATCGACA TTGAACAAAAAAACAATAAATCTCTAATTATATCCACAAAAGATGGACTTTTTGAATATGATGGCGTTTTGATAAATAGA ATTGACAACCGTTCTTTTTCACAGCTTGCAAAGAACAATAACACCATCTATGGCATCTCTGAAAACTACATTATTGACAT CAACAATAAAAAAACGATAGGACTAATTTCAGCATTCAACCCAGATAAAACCACCGTTTTTTATGCCAACAATAACTTTT TTACACTAGGAAGTGTAGATCAAGGTTTTTTTATCATAAAAAAACAAAATAACTTAGTCAAAAAAACCTCTCTAACAACT AATAGCACTTGGCATTTAAGTAAAAACTCTCAAGGTTTTCTAGTTTCATCAGAAGCTGAAAAAATAACCTTATTCAACAA TGAATTCAAAAAAATTAGAGATTACAACACATATACCACAGGATATAAATATGCATTACTCCATAAAAACCAGCTTTTAT ATGGAACAAGTAATGGATTGTTTTTGGATAATAGTAATTCTGTAAAAAAACTTAGCAATGAAACCATATCAGCATTGTCA AGTAATGAAGATGATTCTATTTTATCAGCTGGAACCCCCGATGGTAAAATCTTAATAATAAAAAACTCAGAAATAATAAA AACTTTTAACACAGAAAGGAAGGAACCTATTTTTGATATTGAAACCATATCAGAAAACTTGTTTTATATAGCCAGTCAGG GAGGACTTAGAAAGTATGACAACGGTCAGGAAACACTTATAAGCGAGCAACTGACATATAGTATTCAAAAAGATAGAAAT TATTTATTATTCGGCACATCAAAAGCCTTAATGCGTTATGATATAACTAATGAAAAAATAGACACCTTATTCTCAAAAAA TAAAGAAATCTACTCAATTGCAAGTGATACCAACTTTATTACTGTTTCATCATTAGGAGAGGTAATTATTTTTGATAAGA ATAGTAAAACTTCTTATGCGCTGGGAACATCAAATGGGAGTCAATATGAATACAACTCACCTAGCGCAATAAAAATTAAT GATTTTATATTGTTGGCAGGAATTAACGGGGTAAGCTTAGTATCTCCACAAGAAATTTCTGATTATATAAAAAGTCAAAA AGCAAACAAAACAGAAATATCTAAATTTTCCGTTTTCAACATGAGTCAAGAAAAAAATGGAAAGTATTTAAAAAAACCAA TCGATGTAACAAAAGAAATAACACTTAAATATTCAGACTATCCATTTTCTTTTGATTTCATATCTCCTATGTCTGATGAA TCATCTACTAACTACTACTACAGAATGCTAGGGTTGTCTGATACTTGGATTTACTCTAATGGAACAAACTCCGCAACCTA TACCAACCTATCTCCTGGCGAATACGTATTTCAGGTTTACACCATAAATAATCTTTCAGGCGAAAAATCATCTGAGAGAG AAGTTAACGTAATAATTACGCCTCCTTGGTGGTCATCTACTCAAGCCAAAATATTTTATTTTTTAATAACAATGTTTTTG TCCCTATTTATATTCAAAGCAATTCTTCGTAAAAGAGAAATTCAGCGTCAAATTGCTTTGAGTGAAGAACGACTAAAGCT ATCTCTATGGGGCAGCGGTGATGAAATGTGGGACTGGGATATAGAAACGGGTAATATTTTCCGCTCGAATATTTGGGGTG CATTAGAGTTCCCACGAGATGGACATCGCTCGGGTAATCGAGATGAAGAAAGTAATATACATCCCATGGATCAAGAACGC GTTAGAGAAGCACTAAATAAACACTTCTATGGTGAGACAGATCATTTCGAAGCGGCATATAGAGTTAAAGGCAAAGATGA TAGTTGGATATGGATTTTAGATAGGGCTAAAATTGTAGAACGAGATGATAAAGACAACGCTCTACGAATGACTGGCACTA TTAAAAATATCAGTCAATTTAAACAAAAAGAAGAACAATTAAGACTCTTCGAAAAAGCGATTGAAAATATTTCTGAAGGT ATGTTTATTCTTGACAGTGAATACCGTTTCGTAGAAGTGAACGAGGCTTGCTGTAGAATATCACAACGAAATAGGTCTGA TTTTATTGGCAATTTACTTACCTTTGAATTATATCCTGAATCCTTCTCAAATCAGATTCGTACTATGCTGAAACAGCAAG GTCGATGGGCAAGTGAAGTCGAAGCAAATCGAGGCGATAACAGCCATTTTCATATGGAGCTCACGATTGACGCTATCTAC GATGAATTAGGTGAATTGTCGCATTATGTGGGTGTTTTCTCTGATATATCAAGACGTAAACAGCAGGAAGAAGAACTTCG TAAACTCACCAACAATGATTTATTGACTGGCCTACCCAACCGGTCAAACCTACAAGTCACATTAGGAAACTTAGTCAATA AAGAAATTAATCATGCATTAATGGTACTCGATTTAGATAATTTTAAGCGTATCAATGACTCATTAGGTCACCAAGTTGGT GATAAATTACTAAAACTTGTATCAGTCAGAATTAAATCTTCTGTACCTAAAAACACCAACATCTATCGTTTAGGAGGAGA TGAGTTTGCCATTGTTCTCGATAAAACGTCGGATATTTTAGCCTCCGCCGCTATTGCGGGACGAATTGTTGATGCTTTTA ACACTGTATATGAAATAGACAATGAACAACTTGTCTTAGGTGTGAGTGTTGGAATTGTACTGTATCCAGATGATGAGCAG AATGAGCAAGCCTTACTCAGAAAAGCTGATATTGCCATGTACCATGCAAAATCTGCAGGCGGTAACTGTTACCAATTTTA CTCTGAATCACTCAATGAACATGCAATTAAACAGCTTGAGACCGAAAATCTTATCCGTGAAGGCTTAAAAGAAGATTTAT TTGAAGTTTATTATCAACCCAAAGTCGATCTGAAACATGGTCATGTTGCTGGAATGGAAGCTTTAGTCAGATTAAATCAT CCAACCTTAGGACTTATTCCACCGAATGATTTTATCCCTCTTGCAGAAGAGAATGGTCTGATTGTTGAAATAGGTGAAAT TGTACTCAGAAAGGCCTGTTTTGCCGCGCAGAAGTGGCGTGAGCAAGGTCTATTTAAGGGCCGAGTCGCCGTCAATTTAT CGTCACGACAATTTGCCCTACCCGATCTACAACAGCGGATAGAGTCAATTTTACGACTCACCCAATTACCTGCCTCTCAT TTAGAGCTAGAAATAACTGAAGGTACTGTTATTAAGCAACCAGAAATGGCTATTACTGTTATGCAGCAATTAGCCAAAAT GGGTGTGAGCCTTGCTTTAGATGACTTTGGAACGGGTTATTCATCGCTTTCTTACTTAAAAAGATTCCCGATTCATACGC TGAAAATCGATAAAGCATTTGTTGACGATATTGATAAATCCGACCGCGATTTAAAAATGGTCGATTCCATTATTACCATC GCCCACAATATGGGTCTATCCGTCGTTGGTGAGGGAGTTGAGCAAGCTGCACAGCTAAATATCCTTCGAGCCCTAAATTG TGAAGAAATACAAGGTTACATCTTCAGTAAGGCCATTAATGAAGCAGAGTTTACCCTTTTACTACAGGAGGACCAGGCTA AATCCATCGCGATAAACAACACATTGTAA
Upstream 100 bases:
>100_bases AATTTTTACATTCTCACTTTTGACAAAAGCGGGTATTTCTGGAAAAGTGATGTAACACAATTGTTTCATGGCATCCTCGG ACAATACTAAGAACAACACT
Downstream 100 bases:
>100_bases TCATTATATTACTCATCAGGGCAACTTGAAACATTGGCACAACATCTGCATCAACTGTATCAGTGTCAATAATAAATATT ATCAACTACCCTGAGAGAGA
Product: sensory box protein
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1422_residues MPKVLLKIFIYSCLCLSTLYPSDSIAIYSKELDSSIVLNSNLFGVPQGLSQGTVTSIVQDNDGYLWIGTFNGLNRFDGSN FKYFFADGTNSGLPSSFIRSLQIDKNGILYVGTDNGLAVYDKNNDSFIKYGAPLDNTPIWSINTTIETLIVGTNNAIIDI HGKENHLDLSSKGIGEIKKSIKIGDDYFLKDYSGKLFKINQESSILIKENIIDIEQKNNKSLIISTKDGLFEYDGVLINR IDNRSFSQLAKNNNTIYGISENYIIDINNKKTIGLISAFNPDKTTVFYANNNFFTLGSVDQGFFIIKKQNNLVKKTSLTT NSTWHLSKNSQGFLVSSEAEKITLFNNEFKKIRDYNTYTTGYKYALLHKNQLLYGTSNGLFLDNSNSVKKLSNETISALS SNEDDSILSAGTPDGKILIIKNSEIIKTFNTERKEPIFDIETISENLFYIASQGGLRKYDNGQETLISEQLTYSIQKDRN YLLFGTSKALMRYDITNEKIDTLFSKNKEIYSIASDTNFITVSSLGEVIIFDKNSKTSYALGTSNGSQYEYNSPSAIKIN DFILLAGINGVSLVSPQEISDYIKSQKANKTEISKFSVFNMSQEKNGKYLKKPIDVTKEITLKYSDYPFSFDFISPMSDE SSTNYYYRMLGLSDTWIYSNGTNSATYTNLSPGEYVFQVYTINNLSGEKSSEREVNVIITPPWWSSTQAKIFYFLITMFL SLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGALEFPRDGHRSGNRDEESNIHPMDQER VREALNKHFYGETDHFEAAYRVKGKDDSWIWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLRLFEKAIENISEG MFILDSEYRFVEVNEACCRISQRNRSDFIGNLLTFELYPESFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDAIY DELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLVNKEINHALMVLDLDNFKRINDSLGHQVG DKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQLVLGVSVGIVLYPDDEQ NEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNH PTLGLIPPNDFIPLAEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASH LELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITI AHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAINEAEFTLLLQEDQAKSIAINNTL
Sequences:
NA
Specific function: NA
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA