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The map label for this gene is dppB [H]

Identifier: 239618407

GI number: 239618407

Start: 2176682

End: 2177689

Strand: Direct

Name: dppB [H]

Synonym: Kole_2047

Alternate gene names: 239618407

Gene position: 2176682-2177689 (Clockwise)

Preceding gene: 239618406

Following gene: 239618408

Centisome position: 94.55

GC content: 44.64

Gene sequence:

>1008_bases
GTGTCGTTGAAATGGTACGTGATTACCAGAATACTTTTGGCAATACCAATGTTCTTCATACTACTTCTTTTGATATTCAT
CGTTCTGAGAATCTTGCCTGGAGATCCAGTGCTCGCAATGCTCGGAGGTAAAGCTCCTATTCAGGTTATCGAACAAAAGA
GGCATGAGTTAGGATACGATAAACCTATCATTCAACAGTTTGGAGATTACATCATTGGAGTATTGAAGGGGGATCTCGGT
AGGTCAGCTCTGACGAAAAGACCCATCTCTGAAGAGATAGCAAGGAAACTCCCGGCTACCATCGAGCTCACCATCTTTGG
CTTCGGAATAGCCTTAATCATAGGTATCTTCTGGGGGGCTGAGGCCACGCGGCATCATGGTGGGGTGATAGATGTAGCCG
GACGAATGTACGCCATATTCATATATTCGATCCCCGTTTTCTGGCTGGGGATGCTGTTTCAATGGTTGTTCGGTGTAAAA
CTGAAATGGTTACCGATAGCTGGTAGGATTTCCCCGCTTTTGAGACCAGAGAAGATTACAGGGCTTTACCTCCTCGATTC
CCTGATAACCTGGAATATTCCCGCTTTGAAGGATGCTTTCCTGCATATCATTCTGCCCAGTGTAGCATTGGGCTTAATAA
TTTCGAGTGTTTTCCTTAGAATGGTACGATCCAATATGGTAGTCATGTTGTCTCAGGACTTCGTAAAGGCCGCAAGGGCG
AGAGGAATCAAAGAAAGCAGGGTTATTTACAAACACGCATTAAAAAACGCTTTTGTTCCCATAATGACAGTTATGGGACT
TCAATTTGCAGCCCTGATGGCGGGAGCGGTACTTACGGAAACCACCTTTGCATGGCCTGGAATAGGGAGTTATCTCGTTG
AGAAGATACGTTACAGAGACTTCCCTGCGATACAGGGTACCATAGCGGTTTACGCTATTATCGTGATTGTTATAAGTATT
GTTGTGGACATAGTTAATGCTCTCGTAGATCCAAGGGTAAGATATTAG

Upstream 100 bases:

>100_bases
AGATCTTCAGATACTATTTGCTTTATGTAGAAGAATAAGTTGATTTTTAACCCGGGCCTTTCCCGGCCCGGGTTTTTTGT
ATTGTGCAGGAGGGGTTGCC

Downstream 100 bases:

>100_bases
GGGTGATTGTCCTGTGAATGAACTTCAGTGGAGCCCAACGTATAGACTTGGCAAATCTTTAAAAAGGTTTTTCGGTGATA
AATCTGGCATAATGGCGTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSLKWYVITRILLAIPMFFILLLLIFIVLRILPGDPVLAMLGGKAPIQVIEQKRHELGYDKPIIQQFGDYIIGVLKGDLG
RSALTKRPISEEIARKLPATIELTIFGFGIALIIGIFWGAEATRHHGGVIDVAGRMYAIFIYSIPVFWLGMLFQWLFGVK
LKWLPIAGRISPLLRPEKITGLYLLDSLITWNIPALKDAFLHIILPSVALGLIISSVFLRMVRSNMVVMLSQDFVKAARA
RGIKESRVIYKHALKNAFVPIMTVMGLQFAALMAGAVLTETTFAWPGIGSYLVEKIRYRDFPAIQGTIAVYAIIVIVISI
VVDIVNALVDPRVRY

Sequences:

>Translated_335_residues
MSLKWYVITRILLAIPMFFILLLLIFIVLRILPGDPVLAMLGGKAPIQVIEQKRHELGYDKPIIQQFGDYIIGVLKGDLG
RSALTKRPISEEIARKLPATIELTIFGFGIALIIGIFWGAEATRHHGGVIDVAGRMYAIFIYSIPVFWLGMLFQWLFGVK
LKWLPIAGRISPLLRPEKITGLYLLDSLITWNIPALKDAFLHIILPSVALGLIISSVFLRMVRSNMVVMLSQDFVKAARA
RGIKESRVIYKHALKNAFVPIMTVMGLQFAALMAGAVLTETTFAWPGIGSYLVEKIRYRDFPAIQGTIAVYAIIVIVISI
VVDIVNALVDPRVRY
>Mature_334_residues
SLKWYVITRILLAIPMFFILLLLIFIVLRILPGDPVLAMLGGKAPIQVIEQKRHELGYDKPIIQQFGDYIIGVLKGDLGR
SALTKRPISEEIARKLPATIELTIFGFGIALIIGIFWGAEATRHHGGVIDVAGRMYAIFIYSIPVFWLGMLFQWLFGVKL
KWLPIAGRISPLLRPEKITGLYLLDSLITWNIPALKDAFLHIILPSVALGLIISSVFLRMVRSNMVVMLSQDFVKAARAR
GIKESRVIYKHALKNAFVPIMTVMGLQFAALMAGAVLTETTFAWPGIGSYLVEKIRYRDFPAIQGTIAVYAIIVIVISIV
VDIVNALVDPRVRY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=38.4615384615385, Blast_Score=244, Evalue=5e-66,
Organism=Escherichia coli, GI1787053, Length=330, Percent_Identity=37.2727272727273, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=37.8980891719745, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1789888, Length=332, Percent_Identity=32.2289156626506, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787550, Length=264, Percent_Identity=35.2272727272727, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787497, Length=332, Percent_Identity=28.9156626506024, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788504, Length=371, Percent_Identity=24.5283018867925, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37427; Mature: 37296

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKWYVITRILLAIPMFFILLLLIFIVLRILPGDPVLAMLGGKAPIQVIEQKRHELGYD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCC
KPIIQQFGDYIIGVLKGDLGRSALTKRPISEEIARKLPATIELTIFGFGIALIIGIFWGA
CHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC
EATRHHGGVIDVAGRMYAIFIYSIPVFWLGMLFQWLFGVKLKWLPIAGRISPLLRPEKIT
CHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHH
GLYLLDSLITWNIPALKDAFLHIILPSVALGLIISSVFLRMVRSNMVVMLSQDFVKAARA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
RGIKESRVIYKHALKNAFVPIMTVMGLQFAALMAGAVLTETTFAWPGIGSYLVEKIRYRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
FPAIQGTIAVYAIIVIVISIVVDIVNALVDPRVRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLKWYVITRILLAIPMFFILLLLIFIVLRILPGDPVLAMLGGKAPIQVIEQKRHELGYD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCC
KPIIQQFGDYIIGVLKGDLGRSALTKRPISEEIARKLPATIELTIFGFGIALIIGIFWGA
CHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC
EATRHHGGVIDVAGRMYAIFIYSIPVFWLGMLFQWLFGVKLKWLPIAGRISPLLRPEKIT
CHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHH
GLYLLDSLITWNIPALKDAFLHIILPSVALGLIISSVFLRMVRSNMVVMLSQDFVKAARA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
RGIKESRVIYKHALKNAFVPIMTVMGLQFAALMAGAVLTETTFAWPGIGSYLVEKIRYRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
FPAIQGTIAVYAIIVIVISIVVDIVNALVDPRVRY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]