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The map label for this gene is pepF [H]

Identifier: 239618377

GI number: 239618377

Start: 2146286

End: 2148067

Strand: Direct

Name: pepF [H]

Synonym: Kole_2017

Alternate gene names: 239618377

Gene position: 2146286-2148067 (Clockwise)

Preceding gene: 239618372

Following gene: 239618378

Centisome position: 93.23

GC content: 39.39

Gene sequence:

>1782_bases
ATGACAATGGATGTAAACGATGTAAAATGGGATCTCAGTAAGCTTTATAAGGGCCCAGAAGCTGCTGAACTGGCTGAGGA
TATCGAGTATGTAAAAAAACATTCACAAAGGATTTCCAGAAAATTTGAGGGAAGGATTAATGAACTTTCAACCGAAGAAT
TCGCTGAGCTTTTTACTGATGTTGAGAAAATTTACGAAATCACCGGAAAAATGATGATGTACGCTTATCTTTTTCTTTCC
GGGGATACCTCTAACCCCGAAGCGAACAAGCTTTTCTCCAAGATTCAGGATGTTGCTTCAGAAGTTGAGAACAACCTTGT
TTCTCTGAAACTCGAATTAGCCAGGATGCCAAATGAACTCTTCGAAAAACAGTTCAAAATGCCTCAATTGAAAGATTATG
CCCATTTTGTTCAAAAGCAGCGTGAAGCAAGAAAGTACTTTCTGTCGGAAGCTGAAGAAAAGCTGATAAACATCAAGAAC
CTTACTGGTAGAGAAGCTTTTGTGAAGCTCTATACCGAGTTTACAAGTTCCTTTAGATATGAAATAGAAATAGACGGCGA
GAAAAAGCTTTTTACCCGTAGCGAAGTGGATACTTTGAAAAGGCATCCTGACCCGGAGATAAGAAAGAAAGCCTTCGAGG
TTCTCCTTACCAAATTAAAGGAAAACGAGATAGTTCTTACCAATATATATAACTCCATAGTTAAAGACTGGGTCGTGGAA
TCAAAGAAGAGGAAATACCCTTCTCCCATAAGTCCACGAAACGTTGGAAATGAAATTTCAGATGAAGTAGTCAAATCTCT
CATTGAGGTTACAACAGAAAACAATAAGCTTGTACATGCATATTATCGCCTTAAAGCAAAGATAATGAAGAAGGATAAAC
TGAAGCACAGTGATATTTATGCCCCCCTTGAAACCACCGAGAAGAACTACACCTGGAAGGAAGCAAAGGATCTAGTTTTG
AAGGTGATGGGAGAATTTGATCCGAAAGTCGAGGAGATCATAAGGGAATTCTTCGAAGGTGAATACATACACGCTCCTGT
CCTTCCTAACAAACGTTCCGGTGCCTTTTGTTATTACGTAGGTCCAAACGTTCATCCGTATGTGATGGTGAATTTTACAG
GAAAACAAGACGATGTGTTGACTCTTGCCCACGAGTTAGGGCATGGATTGCATGGAGTTCTCTCTCAAACACAAAATCTT
CTCAATTATCATACACCGTTGACTATGGCAGAGGTAGCATCTGTTTTCTCTGAAATGTTGATGATTGACTATATCCTCAA
TAATATGACAAACAAGGATGAGAAAATAGCTTTTATCGCTTCACAGCTAGAAGGGATGTTTGCCACGATGAATCGTCAGA
ACATGTTCACCAGATTTGAGCTTAAAGCCCACGAAAAAATAGAAAAGCAGTACCAAACATTTGATGAACTCTCCAGCATT
TATTTCGAAGAACTCAAAAATATGTTCGGCGATTCCATCGATTATTTTGATTTCAGCGGTTACGAGTGGGCGGGAATTCC
ACATATGTTCCACACTCCGTTCTATTGTTATGCGTATGATTTCGCTCAACTTATGGTCGTGGCGCTTTATGAAAAATATC
TTGAGGAAGGAGAACCCTTCAAGAAAAAATATCTAGAACTTCTTTCCAGTGGAGGTTCTGATAAACCCGAGAGGTTGCTT
GAAAAAGTAGGAGTTGATCTTTCCGATCCAGCGTTCTGGCAGAAAGGATTTGATTTTATCAACCGTCGTTTCTTAAAAGA
GCTTCAAGATCTAGTATCCTAA

Upstream 100 bases:

>100_bases
ACACATCAGAAAAAGGAATATTTATTCATGATAGAATTTTATAGCATAATTTCAGACATTTATTTTAAAGAATTGTGAGA
AAACCCAATTGGAGGTGCGC

Downstream 100 bases:

>100_bases
TGGTGGGCATAATGCCCACCATTTTTTATAAGATCCTGAGTTTGTGTTTTTATAGTGACCTATATTACTTTGGGTCTGCT
AACAATATTTCGGGACTAAT

Product: peptidase M3A and M3B thimet/oligopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MTMDVNDVKWDLSKLYKGPEAAELAEDIEYVKKHSQRISRKFEGRINELSTEEFAELFTDVEKIYEITGKMMMYAYLFLS
GDTSNPEANKLFSKIQDVASEVENNLVSLKLELARMPNELFEKQFKMPQLKDYAHFVQKQREARKYFLSEAEEKLINIKN
LTGREAFVKLYTEFTSSFRYEIEIDGEKKLFTRSEVDTLKRHPDPEIRKKAFEVLLTKLKENEIVLTNIYNSIVKDWVVE
SKKRKYPSPISPRNVGNEISDEVVKSLIEVTTENNKLVHAYYRLKAKIMKKDKLKHSDIYAPLETTEKNYTWKEAKDLVL
KVMGEFDPKVEEIIREFFEGEYIHAPVLPNKRSGAFCYYVGPNVHPYVMVNFTGKQDDVLTLAHELGHGLHGVLSQTQNL
LNYHTPLTMAEVASVFSEMLMIDYILNNMTNKDEKIAFIASQLEGMFATMNRQNMFTRFELKAHEKIEKQYQTFDELSSI
YFEELKNMFGDSIDYFDFSGYEWAGIPHMFHTPFYCYAYDFAQLMVVALYEKYLEEGEPFKKKYLELLSSGGSDKPERLL
EKVGVDLSDPAFWQKGFDFINRRFLKELQDLVS

Sequences:

>Translated_593_residues
MTMDVNDVKWDLSKLYKGPEAAELAEDIEYVKKHSQRISRKFEGRINELSTEEFAELFTDVEKIYEITGKMMMYAYLFLS
GDTSNPEANKLFSKIQDVASEVENNLVSLKLELARMPNELFEKQFKMPQLKDYAHFVQKQREARKYFLSEAEEKLINIKN
LTGREAFVKLYTEFTSSFRYEIEIDGEKKLFTRSEVDTLKRHPDPEIRKKAFEVLLTKLKENEIVLTNIYNSIVKDWVVE
SKKRKYPSPISPRNVGNEISDEVVKSLIEVTTENNKLVHAYYRLKAKIMKKDKLKHSDIYAPLETTEKNYTWKEAKDLVL
KVMGEFDPKVEEIIREFFEGEYIHAPVLPNKRSGAFCYYVGPNVHPYVMVNFTGKQDDVLTLAHELGHGLHGVLSQTQNL
LNYHTPLTMAEVASVFSEMLMIDYILNNMTNKDEKIAFIASQLEGMFATMNRQNMFTRFELKAHEKIEKQYQTFDELSSI
YFEELKNMFGDSIDYFDFSGYEWAGIPHMFHTPFYCYAYDFAQLMVVALYEKYLEEGEPFKKKYLELLSSGGSDKPERLL
EKVGVDLSDPAFWQKGFDFINRRFLKELQDLVS
>Mature_592_residues
TMDVNDVKWDLSKLYKGPEAAELAEDIEYVKKHSQRISRKFEGRINELSTEEFAELFTDVEKIYEITGKMMMYAYLFLSG
DTSNPEANKLFSKIQDVASEVENNLVSLKLELARMPNELFEKQFKMPQLKDYAHFVQKQREARKYFLSEAEEKLINIKNL
TGREAFVKLYTEFTSSFRYEIEIDGEKKLFTRSEVDTLKRHPDPEIRKKAFEVLLTKLKENEIVLTNIYNSIVKDWVVES
KKRKYPSPISPRNVGNEISDEVVKSLIEVTTENNKLVHAYYRLKAKIMKKDKLKHSDIYAPLETTEKNYTWKEAKDLVLK
VMGEFDPKVEEIIREFFEGEYIHAPVLPNKRSGAFCYYVGPNVHPYVMVNFTGKQDDVLTLAHELGHGLHGVLSQTQNLL
NYHTPLTMAEVASVFSEMLMIDYILNNMTNKDEKIAFIASQLEGMFATMNRQNMFTRFELKAHEKIEKQYQTFDELSSIY
FEELKNMFGDSIDYFDFSGYEWAGIPHMFHTPFYCYAYDFAQLMVVALYEKYLEEGEPFKKKYLELLSSGGSDKPERLLE
KVGVDLSDPAFWQKGFDFINRRFLKELQDLVS

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 69407; Mature: 69276

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMDVNDVKWDLSKLYKGPEAAELAEDIEYVKKHSQRISRKFEGRINELSTEEFAELFTD
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHH
VEKIYEITGKMMMYAYLFLSGDTSNPEANKLFSKIQDVASEVENNLVSLKLELARMPNEL
HHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
FEKQFKMPQLKDYAHFVQKQREARKYFLSEAEEKLINIKNLTGREAFVKLYTEFTSSFRY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEE
EIEIDGEKKLFTRSEVDTLKRHPDPEIRKKAFEVLLTKLKENEIVLTNIYNSIVKDWVVE
EEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
SKKRKYPSPISPRNVGNEISDEVVKSLIEVTTENNKLVHAYYRLKAKIMKKDKLKHSDIY
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCC
APLETTEKNYTWKEAKDLVLKVMGEFDPKVEEIIREFFEGEYIHAPVLPNKRSGAFCYYV
CCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEE
GPNVHPYVMVNFTGKQDDVLTLAHELGHGLHGVLSQTQNLLNYHTPLTMAEVASVFSEML
CCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MIDYILNNMTNKDEKIAFIASQLEGMFATMNRQNMFTRFELKAHEKIEKQYQTFDELSSI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFEELKNMFGDSIDYFDFSGYEWAGIPHMFHTPFYCYAYDFAQLMVVALYEKYLEEGEPF
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
KKKYLELLSSGGSDKPERLLEKVGVDLSDPAFWQKGFDFINRRFLKELQDLVS
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TMDVNDVKWDLSKLYKGPEAAELAEDIEYVKKHSQRISRKFEGRINELSTEEFAELFTD
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHH
VEKIYEITGKMMMYAYLFLSGDTSNPEANKLFSKIQDVASEVENNLVSLKLELARMPNEL
HHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
FEKQFKMPQLKDYAHFVQKQREARKYFLSEAEEKLINIKNLTGREAFVKLYTEFTSSFRY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEE
EIEIDGEKKLFTRSEVDTLKRHPDPEIRKKAFEVLLTKLKENEIVLTNIYNSIVKDWVVE
EEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
SKKRKYPSPISPRNVGNEISDEVVKSLIEVTTENNKLVHAYYRLKAKIMKKDKLKHSDIY
HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCC
APLETTEKNYTWKEAKDLVLKVMGEFDPKVEEIIREFFEGEYIHAPVLPNKRSGAFCYYV
CCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCEEEEEE
GPNVHPYVMVNFTGKQDDVLTLAHELGHGLHGVLSQTQNLLNYHTPLTMAEVASVFSEML
CCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
MIDYILNNMTNKDEKIAFIASQLEGMFATMNRQNMFTRFELKAHEKIEKQYQTFDELSSI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFEELKNMFGDSIDYFDFSGYEWAGIPHMFHTPFYCYAYDFAQLMVVALYEKYLEEGEPF
HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
KKKYLELLSSGGSDKPERLLEKVGVDLSDPAFWQKGFDFINRRFLKELQDLVS
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]