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The map label for this gene is ygaD [C]

Identifier: 239618137

GI number: 239618137

Start: 1901587

End: 1902825

Strand: Direct

Name: ygaD [C]

Synonym: Kole_1770

Alternate gene names: 239618137

Gene position: 1901587-1902825 (Clockwise)

Preceding gene: 239618133

Following gene: 239618138

Centisome position: 82.6

GC content: 43.18

Gene sequence:

>1239_bases
ATGAAGGCTGAAATCATCTCAGTAGGTACTGAGCTTTTACTTGGAGACATTCTTAACACAAATGCGCAATATCTTTCAAA
AAAACTCGCAGAGCTGGGTATTTTCCTTTACAGGCAGACGGTAGTGGGCGACAATATGGATAGGATTCTTCAGGCTTTTG
ATGAAGCTTTTAAGCGCAGTGAGCTTGTAATAACAACAGGTGGGCTCGGACCTACTCAAGATGATCTCACGAAAGAAGCT
GCGGCTAAGTTTTTTTCAAAAAAACTTGTTTTGCATAAACCCACATTGCAGGCGATAAAGGATTATTTCAAAGGTAGAGA
GGAATACTTAACAGAGGGAAATCTGAAACAGGCATATATTCCTGAAGGTGCTATCGTCCTCGATAATTTCTATGGTACCG
CGCCTGGATGTATTATCGAGGATTCCGGGAAAATACTAATCATTCTCCCGGGACCGCCTAAGGAAATGGAACCGATGTTT
GAAACGGCTGTTATGCCATATCTTATGAAACTCCAGAATTGTGTGCTCTATTCTAAGGTCCTGCGAGTCTTTGGAATGGG
TGAATGTCTTGTTGTTGAGAAGATCAAGGAGATAATTGAAAATCAGGACAACCCGACCATTGCTCCTTATGCTAAGGAAG
GTGAGGTCCTTCTCAGAATAACAGCTCGAGCAGATAACAAAGAACTGGCTGAGGGAATGATAGCCCCTATTGAAAAGCAA
ATCCGGGAAAAACTTGGAGAATACATCTATGGTGTGGGTGAAGAAAGCCTGGAGGAGATTGTGGTAAATCTTTTAAGAAA
AACAGGACTGACTATCTCCACGGCTGAATCATGCACAGGTGGGCTTGTTGCATCGAAGATAGTCAATGTTGCGGGAGTAT
CAAAGGTTTTCATGGAGGGAATAATTGCATACAGCAATGAGGCTAAAGTCAAAAGACTTGGCGTGAAAAAAGAAACTCTA
TCTAAATTCGGGGCTGTCAGTGAAGAAACGGCTATTGAAATGGCTTCTGGTATTGCGAAGAGTGCCGGAACAGACATTGG
GCTCTCAATTACTGGAATAGCAGGACCAACCGGTGGTACACCTGAAAAGCCTGTTGGCCTTGTTTATCTCGGTCTCTATG
TAAACGGTAAAACAGCGGTTAAAAAACTTCAGCTGGGAGGAGACAGGAATAAAATAAGAAACCGTGCGGCGATGTTTGCG
CTCGATTTTGTGAGAAGAGCGCTGTTGCCCTTAGTTTGA

Upstream 100 bases:

>100_bases
AGAATTACTGACTATTTTGAGGATGAGAAAACAAAAGCTATGAGTTAAAATCGTAAAAGAAAAGGAGCAATAGCCGGAAA
ATGAAAGGAGATGGGAAAAT

Downstream 100 bases:

>100_bases
AAGCATCGTTGAAGATTTTCGATGGTAGACCGCATGCGTTGTTAATTGTTGTTTTACTTCCGATAAACGTTGTGATTCTT
AACAAAAATGTGGAGTTAAC

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKAEIISVGTELLLGDILNTNAQYLSKKLAELGIFLYRQTVVGDNMDRILQAFDEAFKRSELVITTGGLGPTQDDLTKEA
AAKFFSKKLVLHKPTLQAIKDYFKGREEYLTEGNLKQAYIPEGAIVLDNFYGTAPGCIIEDSGKILIILPGPPKEMEPMF
ETAVMPYLMKLQNCVLYSKVLRVFGMGECLVVEKIKEIIENQDNPTIAPYAKEGEVLLRITARADNKELAEGMIAPIEKQ
IREKLGEYIYGVGEESLEEIVVNLLRKTGLTISTAESCTGGLVASKIVNVAGVSKVFMEGIIAYSNEAKVKRLGVKKETL
SKFGAVSEETAIEMASGIAKSAGTDIGLSITGIAGPTGGTPEKPVGLVYLGLYVNGKTAVKKLQLGGDRNKIRNRAAMFA
LDFVRRALLPLV

Sequences:

>Translated_412_residues
MKAEIISVGTELLLGDILNTNAQYLSKKLAELGIFLYRQTVVGDNMDRILQAFDEAFKRSELVITTGGLGPTQDDLTKEA
AAKFFSKKLVLHKPTLQAIKDYFKGREEYLTEGNLKQAYIPEGAIVLDNFYGTAPGCIIEDSGKILIILPGPPKEMEPMF
ETAVMPYLMKLQNCVLYSKVLRVFGMGECLVVEKIKEIIENQDNPTIAPYAKEGEVLLRITARADNKELAEGMIAPIEKQ
IREKLGEYIYGVGEESLEEIVVNLLRKTGLTISTAESCTGGLVASKIVNVAGVSKVFMEGIIAYSNEAKVKRLGVKKETL
SKFGAVSEETAIEMASGIAKSAGTDIGLSITGIAGPTGGTPEKPVGLVYLGLYVNGKTAVKKLQLGGDRNKIRNRAAMFA
LDFVRRALLPLV
>Mature_412_residues
MKAEIISVGTELLLGDILNTNAQYLSKKLAELGIFLYRQTVVGDNMDRILQAFDEAFKRSELVITTGGLGPTQDDLTKEA
AAKFFSKKLVLHKPTLQAIKDYFKGREEYLTEGNLKQAYIPEGAIVLDNFYGTAPGCIIEDSGKILIILPGPPKEMEPMF
ETAVMPYLMKLQNCVLYSKVLRVFGMGECLVVEKIKEIIENQDNPTIAPYAKEGEVLLRITARADNKELAEGMIAPIEKQ
IREKLGEYIYGVGEESLEEIVVNLLRKTGLTISTAESCTGGLVASKIVNVAGVSKVFMEGIIAYSNEAKVKRLGVKKETL
SKFGAVSEETAIEMASGIAKSAGTDIGLSITGIAGPTGGTPEKPVGLVYLGLYVNGKTAVKKLQLGGDRNKIRNRAAMFA
LDFVRRALLPLV

Specific function: Unknown

COG id: COG1058

COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Homo sapiens, GI41872403, Length=135, Percent_Identity=36.2962962962963, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI41872389, Length=135, Percent_Identity=36.2962962962963, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI296434309, Length=135, Percent_Identity=36.2962962962963, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789052, Length=154, Percent_Identity=44.8051948051948, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1788583, Length=289, Percent_Identity=28.3737024221453, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787818, Length=158, Percent_Identity=31.6455696202532, Blast_Score=95, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71993974, Length=178, Percent_Identity=28.0898876404494, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71993966, Length=178, Percent_Identity=28.0898876404494, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323832, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_KOSOT (C5CFW1)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002941459.1
- ProteinModelPortal:   C5CFW1
- GeneID:   7968258
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_1770
- ProtClustDB:   CLSK2409263
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 44805; Mature: 44805

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAEIISVGTELLLGDILNTNAQYLSKKLAELGIFLYRQTVVGDNMDRILQAFDEAFKRS
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
ELVITTGGLGPTQDDLTKEAAAKFFSKKLVLHKPTLQAIKDYFKGREEYLTEGNLKQAYI
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCHHHHHCCCCCCEEEC
PEGAIVLDNFYGTAPGCIIEDSGKILIILPGPPKEMEPMFETAVMPYLMKLQNCVLYSKV
CCCCEEEECCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRVFGMGECLVVEKIKEIIENQDNPTIAPYAKEGEVLLRITARADNKELAEGMIAPIEKQ
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
IREKLGEYIYGVGEESLEEIVVNLLRKTGLTISTAESCTGGLVASKIVNVAGVSKVFMEG
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECHHHCCCHHHHHHHHHHHHHHHHHHHH
IIAYSNEAKVKRLGVKKETLSKFGAVSEETAIEMASGIAKSAGTDIGLSITGIAGPTGGT
HHHCCCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PEKPVGLVYLGLYVNGKTAVKKLQLGGDRNKIRNRAAMFALDFVRRALLPLV
CCCCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAEIISVGTELLLGDILNTNAQYLSKKLAELGIFLYRQTVVGDNMDRILQAFDEAFKRS
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
ELVITTGGLGPTQDDLTKEAAAKFFSKKLVLHKPTLQAIKDYFKGREEYLTEGNLKQAYI
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCHHHHHCCCCCCEEEC
PEGAIVLDNFYGTAPGCIIEDSGKILIILPGPPKEMEPMFETAVMPYLMKLQNCVLYSKV
CCCCEEEECCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRVFGMGECLVVEKIKEIIENQDNPTIAPYAKEGEVLLRITARADNKELAEGMIAPIEKQ
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
IREKLGEYIYGVGEESLEEIVVNLLRKTGLTISTAESCTGGLVASKIVNVAGVSKVFMEG
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECHHHCCCHHHHHHHHHHHHHHHHHHHH
IIAYSNEAKVKRLGVKKETLSKFGAVSEETAIEMASGIAKSAGTDIGLSITGIAGPTGGT
HHHCCCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PEKPVGLVYLGLYVNGKTAVKKLQLGGDRNKIRNRAAMFALDFVRRALLPLV
CCCCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA