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The map label for this gene is rimM

Identifier: 239617837

GI number: 239617837

Start: 1563290

End: 1563892

Strand: Direct

Name: rimM

Synonym: Kole_1463

Alternate gene names: 239617837

Gene position: 1563290-1563892 (Clockwise)

Preceding gene: 239617836

Following gene: 239617838

Centisome position: 67.91

GC content: 41.29

Gene sequence:

>603_bases
ATGATTAAAGAATTTCGGGATCTGATAGATAGTATGATCCCGGTGGGCAAGGTTGTTAAACCCCACGGACTTCGCGGGGA
AGTGAAAATGAAATCTTTAACCAATCAGCTCAAGGTCTTTGAGACTTTGAAGAAGGTTTTGTTGTATGATGAAAAAGCGG
GAACAGTTGTGAGAGCTGAAATCGATACTATCAGGCGTGCTGGTAAAGGGTATATAGTGCATTTTAAGGGTTTTAAGAGC
GTGGAAGCTGCGGAACGTATTCGGGGTTTTTACGTTTACGCACCGCTCAATGTTTTACCTCCGCTTAAAGAAGGGGAGTA
TTACTTTTACCAGCTTCTAGACTGTGAGGTCTATGATCCAGAGGGAGAATATATTGGAAAGGTTACGGATATAATCGAAA
CCGGAGCCAACGATGTTATTGTGGTCACGAAGGAACTTCCGGATTTTACTGTCGAAGAAGAGTTGATACCTGTGATCAAG
GATTACATAGTAGAATTTCGTTTTAAGGATAAGAAGATTGTAGCGAAACGCCTTGAATACCTTACTCTGGAAGGTAAAGA
GGATAACGACGATGAAAATCAGCGTATTGACGATATTTCCTAA

Upstream 100 bases:

>100_bases
AGATAATAGGAAAAGATGGTAGAACCATCAAGTCGATAAACATCCTGGTGAATGCCCTTGCGGGAGCTTCCAGGGAAAAC
TTCACGTTAAAGGTGATTAG

Downstream 100 bases:

>100_bases
AATGTTTTCGGTAATAACGGATTGGGGCGTTATATCCCGGGCAATAAAAGAAGGGAAAATAGTTTTTGAAGCCATCGATC
TCAGGGATTTCACTACTGAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIKEFRDLIDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGKGYIVHFKGFKS
VEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVTDIIETGANDVIVVTKELPDFTVEEELIPVIK
DYIVEFRFKDKKIVAKRLEYLTLEGKEDNDDENQRIDDIS

Sequences:

>Translated_200_residues
MIKEFRDLIDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGKGYIVHFKGFKS
VEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVTDIIETGANDVIVVTKELPDFTVEEELIPVIK
DYIVEFRFKDKKIVAKRLEYLTLEGKEDNDDENQRIDDIS
>Mature_200_residues
MIKEFRDLIDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGKGYIVHFKGFKS
VEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVTDIIETGANDVIVVTKELPDFTVEEELIPVIK
DYIVEFRFKDKKIVAKRLEYLTLEGKEDNDDENQRIDDIS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=154, Percent_Identity=29.2207792207792, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_KOSOT (C5CEB5)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002941159.1
- GeneID:   7969105
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_1463
- ProtClustDB:   CLSK875840
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 23074; Mature: 23074

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEFRDLIDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAE
CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
IDTIRRAGKGYIVHFKGFKSVEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDP
HHHHHHCCCCEEEEECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECC
EGEYIGKVTDIIETGANDVIVVTKELPDFTVEEELIPVIKDYIVEFRFKDKKIVAKRLEY
CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LTLEGKEDNDDENQRIDDIS
EEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKEFRDLIDSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAE
CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
IDTIRRAGKGYIVHFKGFKSVEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDP
HHHHHHCCCCEEEEECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEEEEEEEECC
EGEYIGKVTDIIETGANDVIVVTKELPDFTVEEELIPVIKDYIVEFRFKDKKIVAKRLEY
CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LTLEGKEDNDDENQRIDDIS
EEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA