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The map label for this gene is ugpB [H]

Identifier: 239617797

GI number: 239617797

Start: 1515359

End: 1516669

Strand: Reverse

Name: ugpB [H]

Synonym: Kole_1422

Alternate gene names: 239617797

Gene position: 1516669-1515359 (Counterclockwise)

Preceding gene: 239617800

Following gene: 239617796

Centisome position: 65.88

GC content: 42.87

Gene sequence:

>1311_bases
ATGAGAAAGTTTTTTCTGATTGTATTGTTGGTAGCCCTTTTAGCAACTCTTGGGCTTGCCAAGGTAAAAATCCAGTTCTG
GCATGCAATGGGAGGCTGGAGGATAGCGCTCCTCCAGGAAATGGCAGAAGAATTCATGGCTCAAAATCCAGACATCGAAG
TTGAAGTACAGTATACAGGGGGTTACGGTGATACAATCAACAAGCTGAATGTCGCCGTGCAGTCGAACACAGCACCACAT
GTCGTTCAGGGTTATGATATCGCTACACAAATGCTCATCGATGGACAGATTGCTGTCCCGATGCAGGACCTTATAGACAA
GGATCCTGACTTCGATATCAACACTTTCTTACCACAGGTACTTAACTACTATAAAGTAAATGGAAAACTCTATTGTATGC
CATTTAATTCTTCGAACCCCATTCTCTACTATAATAAAACCCTCTTTAAAAAAGCTGGGCTAGATCCAAACAAACCTCCA
AGAACCTTCGAAGAACTGATTGAATACGCCAAGAAATTAACTATTAGGGATGAAAAAGGAAACATAATCCAGGCTGGGAT
CACATGGAACCTCCACAGTTGGTTCTTTGAACAATTTATGGCTGTTCAGAATGCTCCACTTGTTGATAACAACAATGGTA
GAACCGGAAGGCCCACGAAGGCTGTTTTTAATTCTGAAGCAGGTTTAAGGTTCTTTAAGTTGTGGTATGATCTGACGAAG
AATGGATACATGATCAATACGAAGGTTCACGATTGGACCGGCGCCAGGAATCTCTTCATATCACAGAAAGTTGCCATGTT
GATAAGTTCCACTTCTGACGTTAGGTTGATGGTAGATTCCTCAAAGGAAAATGGTTTCGAACTTGGTACTGCTTTCCTCC
CGAGACCAAAAGATGCCGAATCAGGTGGTGTAGCCATAGGTGGAGGGAGCCTATGGATCATTGCTGGACATCCCAAAGAA
GAAATTGACGCTGCCTGGCGTTTTGTCAAGTTCATGGCTGAACCGGAACAACAAATAAAATGGCACAAAGGTACCGGTTA
CTTCCCGGTTCGGAAAGACGCTATAGAGACTTTATTAGCCAGCGGATACTACAGTGAAAATCCTCACAATCTCACCGCAA
TCCTGCAACTTCTCCTTTCGACTCAAAATTACAACACAAATGGTGCTATAATCGGTGCTTTTGCTGAAGTTAGATCAATT
GTAGAGAACTATGTACAGAAGATGCTCAACGGTGATATGACACCTGAAGAGGCATTGGCGGCTGCAGAAAGGGAAGCTAC
TAAAGCAATAAGAGAATACGAAGGTTATTGA

Upstream 100 bases:

>100_bases
TTGTTTTTTTGGAGTAGCAAAAACATCTATAAATCTGTTAATATATTTTGTTCTTGAGTGGGGCGTCTTTCGTGCGCCTA
ATTTTGGGGGAGGTGTTTGT

Downstream 100 bases:

>100_bases
TAAAATTTGATTTAGTCCGTTCGGGGCGGATATATCCGCCCCGATTATAGTTCTATTTCAAATTTTTGTGTGTCGTATTG
GGGGTGCAAAGATGCGGAGA

Product: extracellular solute-binding protein family 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRKFFLIVLLVALLATLGLAKVKIQFWHAMGGWRIALLQEMAEEFMAQNPDIEVEVQYTGGYGDTINKLNVAVQSNTAPH
VVQGYDIATQMLIDGQIAVPMQDLIDKDPDFDINTFLPQVLNYYKVNGKLYCMPFNSSNPILYYNKTLFKKAGLDPNKPP
RTFEELIEYAKKLTIRDEKGNIIQAGITWNLHSWFFEQFMAVQNAPLVDNNNGRTGRPTKAVFNSEAGLRFFKLWYDLTK
NGYMINTKVHDWTGARNLFISQKVAMLISSTSDVRLMVDSSKENGFELGTAFLPRPKDAESGGVAIGGGSLWIIAGHPKE
EIDAAWRFVKFMAEPEQQIKWHKGTGYFPVRKDAIETLLASGYYSENPHNLTAILQLLLSTQNYNTNGAIIGAFAEVRSI
VENYVQKMLNGDMTPEEALAAAEREATKAIREYEGY

Sequences:

>Translated_436_residues
MRKFFLIVLLVALLATLGLAKVKIQFWHAMGGWRIALLQEMAEEFMAQNPDIEVEVQYTGGYGDTINKLNVAVQSNTAPH
VVQGYDIATQMLIDGQIAVPMQDLIDKDPDFDINTFLPQVLNYYKVNGKLYCMPFNSSNPILYYNKTLFKKAGLDPNKPP
RTFEELIEYAKKLTIRDEKGNIIQAGITWNLHSWFFEQFMAVQNAPLVDNNNGRTGRPTKAVFNSEAGLRFFKLWYDLTK
NGYMINTKVHDWTGARNLFISQKVAMLISSTSDVRLMVDSSKENGFELGTAFLPRPKDAESGGVAIGGGSLWIIAGHPKE
EIDAAWRFVKFMAEPEQQIKWHKGTGYFPVRKDAIETLLASGYYSENPHNLTAILQLLLSTQNYNTNGAIIGAFAEVRSI
VENYVQKMLNGDMTPEEALAAAEREATKAIREYEGY
>Mature_436_residues
MRKFFLIVLLVALLATLGLAKVKIQFWHAMGGWRIALLQEMAEEFMAQNPDIEVEVQYTGGYGDTINKLNVAVQSNTAPH
VVQGYDIATQMLIDGQIAVPMQDLIDKDPDFDINTFLPQVLNYYKVNGKLYCMPFNSSNPILYYNKTLFKKAGLDPNKPP
RTFEELIEYAKKLTIRDEKGNIIQAGITWNLHSWFFEQFMAVQNAPLVDNNNGRTGRPTKAVFNSEAGLRFFKLWYDLTK
NGYMINTKVHDWTGARNLFISQKVAMLISSTSDVRLMVDSSKENGFELGTAFLPRPKDAESGGVAIGGGSLWIIAGHPKE
EIDAAWRFVKFMAEPEQQIKWHKGTGYFPVRKDAIETLLASGYYSENPHNLTAILQLLLSTQNYNTNGAIIGAFAEVRSI
VENYVQKMLNGDMTPEEALAAAEREATKAIREYEGY

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=421, Percent_Identity=30.8788598574822, Blast_Score=213, Evalue=3e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49111; Mature: 49111

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFFLIVLLVALLATLGLAKVKIQFWHAMGGWRIALLQEMAEEFMAQNPDIEVEVQYTG
CCHHHHHHHHHHHHHHCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEC
GYGDTINKLNVAVQSNTAPHVVQGYDIATQMLIDGQIAVPMQDLIDKDPDFDINTFLPQV
CCCCCCCEEEEEEECCCCCCEEECCCHHHHHEECCEEECCHHHHCCCCCCCCHHHHHHHH
LNYYKVNGKLYCMPFNSSNPILYYNKTLFKKAGLDPNKPPRTFEELIEYAKKLTIRDEKG
HHHEEECCEEEEEEECCCCCEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCC
NIIQAGITWNLHSWFFEQFMAVQNAPLVDNNNGRTGRPTKAVFNSEAGLRFFKLWYDLTK
CEEEEEEEECHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCC
NGYMINTKVHDWTGARNLFISQKVAMLISSTSDVRLMVDSSKENGFELGTAFLPRPKDAE
CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCEECCCCCCCC
SGGVAIGGGSLWIIAGHPKEEIDAAWRFVKFMAEPEQQIKWHKGTGYFPVRKDAIETLLA
CCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHH
SGYYSENPHNLTAILQLLLSTQNYNTNGAIIGAFAEVRSIVENYVQKMLNGDMTPEEALA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAEREATKAIREYEGY
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKFFLIVLLVALLATLGLAKVKIQFWHAMGGWRIALLQEMAEEFMAQNPDIEVEVQYTG
CCHHHHHHHHHHHHHHCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEC
GYGDTINKLNVAVQSNTAPHVVQGYDIATQMLIDGQIAVPMQDLIDKDPDFDINTFLPQV
CCCCCCCEEEEEEECCCCCCEEECCCHHHHHEECCEEECCHHHHCCCCCCCCHHHHHHHH
LNYYKVNGKLYCMPFNSSNPILYYNKTLFKKAGLDPNKPPRTFEELIEYAKKLTIRDEKG
HHHEEECCEEEEEEECCCCCEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCC
NIIQAGITWNLHSWFFEQFMAVQNAPLVDNNNGRTGRPTKAVFNSEAGLRFFKLWYDLTK
CEEEEEEEECHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHCCCCCHHHHHHHHHHCC
NGYMINTKVHDWTGARNLFISQKVAMLISSTSDVRLMVDSSKENGFELGTAFLPRPKDAE
CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCEECCCCCCCC
SGGVAIGGGSLWIIAGHPKEEIDAAWRFVKFMAEPEQQIKWHKGTGYFPVRKDAIETLLA
CCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHH
SGYYSENPHNLTAILQLLLSTQNYNTNGAIIGAFAEVRSIVENYVQKMLNGDMTPEEALA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAEREATKAIREYEGY
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]