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The map label for this gene is ycjO [C]

Identifier: 239617554

GI number: 239617554

Start: 1241003

End: 1241905

Strand: Direct

Name: ycjO [C]

Synonym: Kole_1172

Alternate gene names: 239617554

Gene position: 1241003-1241905 (Clockwise)

Preceding gene: 239617553

Following gene: 239617555

Centisome position: 53.91

GC content: 39.65

Gene sequence:

>903_bases
ATGAAGAAGTACTCAAGAGAACGGCGTGAAACTCAATTGGGAATGCTTTTTGTTATACCTTCGCTCATTGTAATTGCTCT
TGTGATTTTTTTCCCAATTGGGCGCACCTTTTACCTGTCTTTGTTTAAATACAATTTAAAGTTTCCAAGACTGATGCGGT
TTATTGGTTTGGGTAATTACATGAACCTGTTCCAGGATGATAGATTCTGGAATTCAGTAAAAGTTACGTTATCTTTTACT
TTTACAGCCGTTGCCTTCGAAACTGTTCTTGGGATTCTTATTGCACTTGTTATAAACAAGAATTTTAAAGGCAGAGGAAT
AGTAAGGGCTGCTACACTTGTGCCCTGGGCTATTCCAACGGTTGCCTCTGCACAGATGTGGCGTATGATGTTTTCAGACC
AGTTTGGAGTTATAAACGACATTTTTATGAAGTTGGGAATTATAAGCGAATATGTGAATTTCATAGGAAAGCAACCTCAT
GCTTTTTGGGCAATGGTTGCTGCTGATGTTTGGAAGACCACACCTTTCATGGCGCTGCTTCTTCTCGCTGGACTTCAGGT
GATTCCCATGCAGATCTACGAAGCGGCAAAAGTAGATGGTGCTAATAAATGGAAGCAATTCTGGTCGATTACCTTGCCAA
TGTTAAAACCGACAATACTAGTTGCTTTGATTTTTAGAACGCTTGACACTTTTAAGGCTTTTGATATTTCACTGGTTTTG
ACAAATGGTGGACCTGCTTCGAGTACTGAATTACTCTCGCTTTACAACTACAAGATAATGATTCAGCAGTTGAATTTTGG
AAAAGGATCGGCTATCGCCATCGTGTTATTCGCCTTCACGATGCTTATAGCCTTTTTCTTCATAAAGATTCTTGGGGCAA
ATCCATATTCTTCAGGGAAGTGA

Upstream 100 bases:

>100_bases
AAGAAGATCAAGGCAATATATTGGTGATAATGTTTATAAGATCTTTTTGCCTCAAATCTGGCCCCTTAAGGGGCCAGATT
TATTGAAGGAGGGTTGAAGC

Downstream 100 bases:

>100_bases
TTGAATGAAGCGTAGAAAACTCAATCAGTTGCTTTTACTTATAACGGTGATGGTGATAGTAATTTATATGTTTTTTCCCT
TTTACTGGCTTTTTATATCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKKYSRERRETQLGMLFVIPSLIVIALVIFFPIGRTFYLSLFKYNLKFPRLMRFIGLGNYMNLFQDDRFWNSVKVTLSFT
FTAVAFETVLGILIALVINKNFKGRGIVRAATLVPWAIPTVASAQMWRMMFSDQFGVINDIFMKLGIISEYVNFIGKQPH
AFWAMVAADVWKTTPFMALLLLAGLQVIPMQIYEAAKVDGANKWKQFWSITLPMLKPTILVALIFRTLDTFKAFDISLVL
TNGGPASSTELLSLYNYKIMIQQLNFGKGSAIAIVLFAFTMLIAFFFIKILGANPYSSGK

Sequences:

>Translated_300_residues
MKKYSRERRETQLGMLFVIPSLIVIALVIFFPIGRTFYLSLFKYNLKFPRLMRFIGLGNYMNLFQDDRFWNSVKVTLSFT
FTAVAFETVLGILIALVINKNFKGRGIVRAATLVPWAIPTVASAQMWRMMFSDQFGVINDIFMKLGIISEYVNFIGKQPH
AFWAMVAADVWKTTPFMALLLLAGLQVIPMQIYEAAKVDGANKWKQFWSITLPMLKPTILVALIFRTLDTFKAFDISLVL
TNGGPASSTELLSLYNYKIMIQQLNFGKGSAIAIVLFAFTMLIAFFFIKILGANPYSSGK
>Mature_300_residues
MKKYSRERRETQLGMLFVIPSLIVIALVIFFPIGRTFYLSLFKYNLKFPRLMRFIGLGNYMNLFQDDRFWNSVKVTLSFT
FTAVAFETVLGILIALVINKNFKGRGIVRAATLVPWAIPTVASAQMWRMMFSDQFGVINDIFMKLGIISEYVNFIGKQPH
AFWAMVAADVWKTTPFMALLLLAGLQVIPMQIYEAAKVDGANKWKQFWSITLPMLKPTILVALIFRTLDTFKAFDISLVL
TNGGPASSTELLSLYNYKIMIQQLNFGKGSAIAIVLFAFTMLIAFFFIKILGANPYSSGK

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=225, Percent_Identity=31.1111111111111, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789861, Length=276, Percent_Identity=28.6231884057971, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1790465, Length=227, Percent_Identity=27.3127753303965, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788764, Length=223, Percent_Identity=27.3542600896861, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34023; Mature: 34023

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYSRERRETQLGMLFVIPSLIVIALVIFFPIGRTFYLSLFKYNLKFPRLMRFIGLGNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHH
MNLFQDDRFWNSVKVTLSFTFTAVAFETVLGILIALVINKNFKGRGIVRAATLVPWAIPT
HHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHH
VASAQMWRMMFSDQFGVINDIFMKLGIISEYVNFIGKQPHAFWAMVAADVWKTTPFMALL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH
LLAGLQVIPMQIYEAAKVDGANKWKQFWSITLPMLKPTILVALIFRTLDTFKAFDISLVL
HHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
TNGGPASSTELLSLYNYKIMIQQLNFGKGSAIAIVLFAFTMLIAFFFIKILGANPYSSGK
ECCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKYSRERRETQLGMLFVIPSLIVIALVIFFPIGRTFYLSLFKYNLKFPRLMRFIGLGNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCHH
MNLFQDDRFWNSVKVTLSFTFTAVAFETVLGILIALVINKNFKGRGIVRAATLVPWAIPT
HHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHH
VASAQMWRMMFSDQFGVINDIFMKLGIISEYVNFIGKQPHAFWAMVAADVWKTTPFMALL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH
LLAGLQVIPMQIYEAAKVDGANKWKQFWSITLPMLKPTILVALIFRTLDTFKAFDISLVL
HHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
TNGGPASSTELLSLYNYKIMIQQLNFGKGSAIAIVLFAFTMLIAFFFIKILGANPYSSGK
ECCCCCCHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA