Click here to switch to the map view.

The map label for this gene is yurN [H]

Identifier: 239617457

GI number: 239617457

Start: 1140628

End: 1141527

Strand: Reverse

Name: yurN [H]

Synonym: Kole_1072

Alternate gene names: 239617457

Gene position: 1141527-1140628 (Counterclockwise)

Preceding gene: 239617458

Following gene: 239617456

Centisome position: 49.59

GC content: 36.44

Gene sequence:

>900_bases
ATGTCGAGGATATACTATGAGAAAAAAAGAGGTTTCAAATATGCTTTTATATTCCTTCTACCTGGTTTGATTTTACTGAT
TACTTTTATAATTATCCCTTTTCTTTCGGCTTTTTATCTTTCTTTTACCAACCAAAGGTTAATCTCAAGATTGCCGACAA
AGTTCATTGGACTGGCAAATTATAAAAAAATATTGAATGATGATCTCTTTTGGAAGGGATTACTGAACATTTTCAAGTTC
GTTCTAATTGTTGTTCCAATTCAAACAGTCTTTGCACTTGGGTTGGCCTTGCTGGTAAACAAAAAAATTAATTTTACTAA
ATTCTTCCGAACTGTTTATTTTATGCCTACAGTCACCACAATGGTTGTTGTCTCGGTCATCTGGACTTTTCTATATAATC
CGGAGGGGTTGATAAATCTTTTTCTTCACAAAATAAGTTTTGGAAGCTGGCAACCTGTTGATTTTATAAAGAGTGAAAAC
TGGGCGTTTCCGGCGATTATGTTCATGTCAATTTGGCAAGGTGTTGGTTTTCAGATGCTGATATTCCTAACCGGGCTTCA
AGAAATTCCGGCATCTCTTTATGAGGCTGCAACTATTGATGGAGCAAATGCTTGGCAGAAATTTTTGAAGATAACTCTTC
CTCAGTTGAAAAATACGACGGCATTTGTAATTATTTCAACAACAATTCTGGCTTTCAGGCTCTTTGACCAGGTAAAAATC
ATGACTGATGGAGGTCCTAATGGTGCTACTTATACTGTTGTGCTTCATATTTTCAACATGGGATTCAAAAGGCAATACAT
TGGTTATGCTTCCGCACTGACTGTCGTTTTCTTCTTGCTTGTCCTGGCAATTTCTGTAACCCAGCGTTTTGTTTTGAGAG
AAGAAAGAGAGGTGTCATGA

Upstream 100 bases:

>100_bases
TTATCCTATTTACTGATTTACCACAAAGAAAGTTAGAGTAAAATCATGGAGGTGGGGTGGTTTCACCCCATCTCTTTTTC
GGAAAGAAGGGTGAAAAAGA

Downstream 100 bases:

>100_bases
AATGATCAAAAAAAGAAGCAAGAAAAGAATAGAACTTGTGGATAAGATTATCAGTTACACCCTCATGACACTGCTCGCTA
TATTTTTCCTTTTTCCTCTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSRIYYEKKRGFKYAFIFLLPGLILLITFIIIPFLSAFYLSFTNQRLISRLPTKFIGLANYKKILNDDLFWKGLLNIFKF
VLIVVPIQTVFALGLALLVNKKINFTKFFRTVYFMPTVTTMVVVSVIWTFLYNPEGLINLFLHKISFGSWQPVDFIKSEN
WAFPAIMFMSIWQGVGFQMLIFLTGLQEIPASLYEAATIDGANAWQKFLKITLPQLKNTTAFVIISTTILAFRLFDQVKI
MTDGGPNGATYTVVLHIFNMGFKRQYIGYASALTVVFFLLVLAISVTQRFVLREEREVS

Sequences:

>Translated_299_residues
MSRIYYEKKRGFKYAFIFLLPGLILLITFIIIPFLSAFYLSFTNQRLISRLPTKFIGLANYKKILNDDLFWKGLLNIFKF
VLIVVPIQTVFALGLALLVNKKINFTKFFRTVYFMPTVTTMVVVSVIWTFLYNPEGLINLFLHKISFGSWQPVDFIKSEN
WAFPAIMFMSIWQGVGFQMLIFLTGLQEIPASLYEAATIDGANAWQKFLKITLPQLKNTTAFVIISTTILAFRLFDQVKI
MTDGGPNGATYTVVLHIFNMGFKRQYIGYASALTVVFFLLVLAISVTQRFVLREEREVS
>Mature_298_residues
SRIYYEKKRGFKYAFIFLLPGLILLITFIIIPFLSAFYLSFTNQRLISRLPTKFIGLANYKKILNDDLFWKGLLNIFKFV
LIVVPIQTVFALGLALLVNKKINFTKFFRTVYFMPTVTTMVVVSVIWTFLYNPEGLINLFLHKISFGSWQPVDFIKSENW
AFPAIMFMSIWQGVGFQMLIFLTGLQEIPASLYEAATIDGANAWQKFLKITLPQLKNTTAFVIISTTILAFRLFDQVKIM
TDGGPNGATYTVVLHIFNMGFKRQYIGYASALTVVFFLLVLAISVTQRFVLREEREVS

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=284, Percent_Identity=29.5774647887324, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787570, Length=259, Percent_Identity=28.957528957529, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790465, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34389; Mature: 34257

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIYYEKKRGFKYAFIFLLPGLILLITFIIIPFLSAFYLSFTNQRLISRLPTKFIGLAN
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YKKILNDDLFWKGLLNIFKFVLIVVPIQTVFALGLALLVNKKINFTKFFRTVYFMPTVTT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
MVVVSVIWTFLYNPEGLINLFLHKISFGSWQPVDFIKSENWAFPAIMFMSIWQGVGFQML
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHH
IFLTGLQEIPASLYEAATIDGANAWQKFLKITLPQLKNTTAFVIISTTILAFRLFDQVKI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHEE
MTDGGPNGATYTVVLHIFNMGFKRQYIGYASALTVVFFLLVLAISVTQRFVLREEREVS
EECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRIYYEKKRGFKYAFIFLLPGLILLITFIIIPFLSAFYLSFTNQRLISRLPTKFIGLAN
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YKKILNDDLFWKGLLNIFKFVLIVVPIQTVFALGLALLVNKKINFTKFFRTVYFMPTVTT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
MVVVSVIWTFLYNPEGLINLFLHKISFGSWQPVDFIKSENWAFPAIMFMSIWQGVGFQML
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHH
IFLTGLQEIPASLYEAATIDGANAWQKFLKITLPQLKNTTAFVIISTTILAFRLFDQVKI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHEE
MTDGGPNGATYTVVLHIFNMGFKRQYIGYASALTVVFFLLVLAISVTQRFVLREEREVS
EECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]