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The map label for this gene is araQ [H]

Identifier: 239617456

GI number: 239617456

Start: 1139772

End: 1140626

Strand: Reverse

Name: araQ [H]

Synonym: Kole_1071

Alternate gene names: 239617456

Gene position: 1140626-1139772 (Counterclockwise)

Preceding gene: 239617457

Following gene: 239617455

Centisome position: 49.55

GC content: 40.12

Gene sequence:

>855_bases
ATGATCAAAAAAAGAAGCAAGAAAAGAATAGAACTTGTGGATAAGATTATCAGTTACACCCTCATGACACTGCTCGCTAT
ATTTTTCCTTTTTCCTCTGATATATATGATCTCGACATCGTTCAATCCAGACGAGCTGAATATTCTCAGAAGAATGGGAT
CGATTAAAGCTTTCATTCCATCGCCTGTGTCGCTTAAAAACTATCTGGATGTCTTTACCAGAATGCCTTTTGGCAGGTTC
ATATTCAACTCAGTCTTCATAGTTACTGCAACAGTTATAGCTGGACTTTTTGTAAACAGCATGATGGCTTTTGGATTAGC
AAGATTCACTTTTCGAGGAAGAGGCTTTTTAGTATCGCTCATAGTGGCTTTGATGATAATCCCTTTTGAAACCATTGCGA
TTCCTTTGCTCCTAATGACAAATAGATTTGGCTGGCTCGATAGCTATCATGTTCAGATAATTCCCTTTATAGCCAATCCG
TTTTACATCTTCCTTTTTTACCAATTTTTCATTGGTTTTCCAAAAGCGCTCGAAGAAGCCGCTCTGATAGACGGAGCGAA
CTGGCTTAAAATATACTGGAAGATTGCTCTACCTTTATCAAAACCCATACTTTCAAGTGTTGCGATTTTGCAATTCCTTA
CACAATGGGGTTTCTTCCTCTGGCCACTCATGGTTACAAGAGGACCAGAATACAGACCTCTTCCTGTTGCTATGCAGGTT
TTCTTCGGTCAATATCCGAGGGATTGGGGCGACATAATGGCTTTTGCCACAATGATGACAGCCCCGGTGTTAATGCTCTT
CGTTGCGCTTCAAGGGCAGTATGTAAAGAGCATTTCTCAGACAGGAATAAAATAA

Upstream 100 bases:

>100_bases
GGTTATGCTTCCGCACTGACTGTCGTTTTCTTCTTGCTTGTCCTGGCAATTTCTGTAACCCAGCGTTTTGTTTTGAGAGA
AGAAAGAGAGGTGTCATGAA

Downstream 100 bases:

>100_bases
GTTTGTGTGGTGGTGCTATGAAAAAGATTTTAATAATTGGCGAACTGCTCATCGACTTGATTTCCGAAGAGTATGTGGAT
GATCTTGCTGATGCAAAAAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MIKKRSKKRIELVDKIISYTLMTLLAIFFLFPLIYMISTSFNPDELNILRRMGSIKAFIPSPVSLKNYLDVFTRMPFGRF
IFNSVFIVTATVIAGLFVNSMMAFGLARFTFRGRGFLVSLIVALMIIPFETIAIPLLLMTNRFGWLDSYHVQIIPFIANP
FYIFLFYQFFIGFPKALEEAALIDGANWLKIYWKIALPLSKPILSSVAILQFLTQWGFFLWPLMVTRGPEYRPLPVAMQV
FFGQYPRDWGDIMAFATMMTAPVLMLFVALQGQYVKSISQTGIK

Sequences:

>Translated_284_residues
MIKKRSKKRIELVDKIISYTLMTLLAIFFLFPLIYMISTSFNPDELNILRRMGSIKAFIPSPVSLKNYLDVFTRMPFGRF
IFNSVFIVTATVIAGLFVNSMMAFGLARFTFRGRGFLVSLIVALMIIPFETIAIPLLLMTNRFGWLDSYHVQIIPFIANP
FYIFLFYQFFIGFPKALEEAALIDGANWLKIYWKIALPLSKPILSSVAILQFLTQWGFFLWPLMVTRGPEYRPLPVAMQV
FFGQYPRDWGDIMAFATMMTAPVLMLFVALQGQYVKSISQTGIK
>Mature_284_residues
MIKKRSKKRIELVDKIISYTLMTLLAIFFLFPLIYMISTSFNPDELNILRRMGSIKAFIPSPVSLKNYLDVFTRMPFGRF
IFNSVFIVTATVIAGLFVNSMMAFGLARFTFRGRGFLVSLIVALMIIPFETIAIPLLLMTNRFGWLDSYHVQIIPFIANP
FYIFLFYQFFIGFPKALEEAALIDGANWLKIYWKIALPLSKPILSSVAILQFLTQWGFFLWPLMVTRGPEYRPLPVAMQV
FFGQYPRDWGDIMAFATMMTAPVLMLFVALQGQYVKSISQTGIK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=26.4808362369338, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789860, Length=275, Percent_Identity=24.7272727272727, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790464, Length=304, Percent_Identity=22.6973684210526, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32653; Mature: 32653

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKRSKKRIELVDKIISYTLMTLLAIFFLFPLIYMISTSFNPDELNILRRMGSIKAFIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCC
SPVSLKNYLDVFTRMPFGRFIFNSVFIVTATVIAGLFVNSMMAFGLARFTFRGRGFLVSL
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IVALMIIPFETIAIPLLLMTNRFGWLDSYHVQIIPFIANPFYIFLFYQFFIGFPKALEEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHH
ALIDGANWLKIYWKIALPLSKPILSSVAILQFLTQWGFFLWPLMVTRGPEYRPLPVAMQV
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FFGQYPRDWGDIMAFATMMTAPVLMLFVALQGQYVKSISQTGIK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
>Mature Secondary Structure
MIKKRSKKRIELVDKIISYTLMTLLAIFFLFPLIYMISTSFNPDELNILRRMGSIKAFIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCC
SPVSLKNYLDVFTRMPFGRFIFNSVFIVTATVIAGLFVNSMMAFGLARFTFRGRGFLVSL
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IVALMIIPFETIAIPLLLMTNRFGWLDSYHVQIIPFIANPFYIFLFYQFFIGFPKALEEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHH
ALIDGANWLKIYWKIALPLSKPILSSVAILQFLTQWGFFLWPLMVTRGPEYRPLPVAMQV
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FFGQYPRDWGDIMAFATMMTAPVLMLFVALQGQYVKSISQTGIK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]