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The map label for this gene is ugpB [H]

Identifier: 239617327

GI number: 239617327

Start: 990175

End: 991404

Strand: Reverse

Name: ugpB [H]

Synonym: Kole_0936

Alternate gene names: 239617327

Gene position: 991404-990175 (Counterclockwise)

Preceding gene: 239617328

Following gene: 239617326

Centisome position: 43.06

GC content: 41.63

Gene sequence:

>1230_bases
ATGAGAAAGCTTCTTTTAGTGGGGTTGTTGGTTCTTTTCACAATTACGGTGCTTTCTGTGGAGATCGTGTTCTGGTATCC
TTTGAGCGGAACAAAAGGGCAGGTATTGAAAGAGATTGTCGAGAGGTTCGATAAGGCTCATCCGGATATAAAGGTAAAGC
TTGTTTACACTGGAAAATACAGAGAAACTGCTCAAAAGGTTATGTCGGCACTGGTAACCAAGAGCCTTCCGAATGGAGGA
ATAATTCCTGCCGGTCCAATATTCACAGGTGCTTATGGGAATTACAAGATACTCGAGTATATGTTGTACGATCCTGATTT
TGATATTAGTGATTTCTATGATGTCGCCTGGGATTATGCAAAGTACAAGGGTAGAATATGTGCTATACCATACAACATAA
GTACCCCGGTTCTCATATACAACAAGAAACTTATGGAAGAAGCCGGACTCGATCCCAACAGACCGCCCGAGACATGGGAG
GAATTACTGGAATACGCCAAGAAAATAACAAAGGACCTGAACGGCGATGGTGAACCAGACGTATGGGGATTGAATATTAA
AGACACTCCATGGCTTTTCAAAGCAATGCTGTTCCAGAATGATTGTGAAATAATAGATGCAGATACTATGACCCCTCTCT
TCGATGGTCCGAAAGGGGTAGAAGCCGCTGCTTTCTGGAAGAAATTAATCGATGAAAAGGCAATGCCCGTCGGAATGCAT
AATTTAGCTGACAAACAGTTTATATCTGGAACCCTCGGTTTTTATATGGGAAGCTCTTCGAGGATAGGAAAATGGTGCGG
AAAACTGCCCTTTGAGGTTGGAGTCGCATTCCTTCCAAAGAAGGTTAAAAGGGCTATTCCAATAGGTGGAGCTGTTCTCG
TTATGTTCCCTCACAGCAAAGAAGAAGATGACGCCATGTGGAAACTCATAAAATGGCTCGTATCACCCGAGAATCTCGGT
GAATTCTGTATAAAGACCGGTTATATTCCTATAAGAGAATCTGTTTTGGAAGTACCTGAGGTTAAAAAATTCATGGAAGA
AAACCCAGATTATAGAGTTGCTTTTGAACAGATGAAATATGGAAAAGCTTACTGGCATTTTGAACAGATGGGAACAATGG
ACTATCTATTATACGAATACCTCGACAAGATCGAGAGGGGTATATTAACACCAGAAGAGGCAATGAAAGAAGCAGCAGAA
AAGCTTAAGAAGGAGATAGAAAACGAATGA

Upstream 100 bases:

>100_bases
CCTGTATTAATTGTATATATATTGGCCGAGAGATATCTGGTTAAATCCACAACGTTAACCGGTTTGAAGTTTTGAACTCT
AAAGGAGGAGGTGTTTTGTT

Downstream 100 bases:

>100_bases
AAATGAACCTGTCCTTTTCGACTGCAGCCTTGTTTCCGAGAAACAGTCTTGATTCTTTAAAAATTGTAGAAGAAGCGGGA
TTTCAGTATGCAGAATTAAT

Product: extracellular solute-binding protein family 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRKLLLVGLLVLFTITVLSVEIVFWYPLSGTKGQVLKEIVERFDKAHPDIKVKLVYTGKYRETAQKVMSALVTKSLPNGG
IIPAGPIFTGAYGNYKILEYMLYDPDFDISDFYDVAWDYAKYKGRICAIPYNISTPVLIYNKKLMEEAGLDPNRPPETWE
ELLEYAKKITKDLNGDGEPDVWGLNIKDTPWLFKAMLFQNDCEIIDADTMTPLFDGPKGVEAAAFWKKLIDEKAMPVGMH
NLADKQFISGTLGFYMGSSSRIGKWCGKLPFEVGVAFLPKKVKRAIPIGGAVLVMFPHSKEEDDAMWKLIKWLVSPENLG
EFCIKTGYIPIRESVLEVPEVKKFMEENPDYRVAFEQMKYGKAYWHFEQMGTMDYLLYEYLDKIERGILTPEEAMKEAAE
KLKKEIENE

Sequences:

>Translated_409_residues
MRKLLLVGLLVLFTITVLSVEIVFWYPLSGTKGQVLKEIVERFDKAHPDIKVKLVYTGKYRETAQKVMSALVTKSLPNGG
IIPAGPIFTGAYGNYKILEYMLYDPDFDISDFYDVAWDYAKYKGRICAIPYNISTPVLIYNKKLMEEAGLDPNRPPETWE
ELLEYAKKITKDLNGDGEPDVWGLNIKDTPWLFKAMLFQNDCEIIDADTMTPLFDGPKGVEAAAFWKKLIDEKAMPVGMH
NLADKQFISGTLGFYMGSSSRIGKWCGKLPFEVGVAFLPKKVKRAIPIGGAVLVMFPHSKEEDDAMWKLIKWLVSPENLG
EFCIKTGYIPIRESVLEVPEVKKFMEENPDYRVAFEQMKYGKAYWHFEQMGTMDYLLYEYLDKIERGILTPEEAMKEAAE
KLKKEIENE
>Mature_409_residues
MRKLLLVGLLVLFTITVLSVEIVFWYPLSGTKGQVLKEIVERFDKAHPDIKVKLVYTGKYRETAQKVMSALVTKSLPNGG
IIPAGPIFTGAYGNYKILEYMLYDPDFDISDFYDVAWDYAKYKGRICAIPYNISTPVLIYNKKLMEEAGLDPNRPPETWE
ELLEYAKKITKDLNGDGEPDVWGLNIKDTPWLFKAMLFQNDCEIIDADTMTPLFDGPKGVEAAAFWKKLIDEKAMPVGMH
NLADKQFISGTLGFYMGSSSRIGKWCGKLPFEVGVAFLPKKVKRAIPIGGAVLVMFPHSKEEDDAMWKLIKWLVSPENLG
EFCIKTGYIPIRESVLEVPEVKKFMEENPDYRVAFEQMKYGKAYWHFEQMGTMDYLLYEYLDKIERGILTPEEAMKEAAE
KLKKEIENE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=402, Percent_Identity=27.363184079602, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46768; Mature: 46768

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLLVGLLVLFTITVLSVEIVFWYPLSGTKGQVLKEIVERFDKAHPDIKVKLVYTGKY
CHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCH
RETAQKVMSALVTKSLPNGGIIPAGPIFTGAYGNYKILEYMLYDPDFDISDFYDVAWDYA
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
KYKGRICAIPYNISTPVLIYNKKLMEEAGLDPNRPPETWEELLEYAKKITKDLNGDGEPD
HHCCCEEEEECCCCCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
VWGLNIKDTPWLFKAMLFQNDCEIIDADTMTPLFDGPKGVEAAAFWKKLIDEKAMPVGMH
EEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
NLADKQFISGTLGFYMGSSSRIGKWCGKLPFEVGVAFLPKKVKRAIPIGGAVLVMFPHSK
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EEDDAMWKLIKWLVSPENLGEFCIKTGYIPIRESVLEVPEVKKFMEENPDYRVAFEQMKY
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCEEEHHHHHC
GKAYWHFEQMGTMDYLLYEYLDKIERGILTPEEAMKEAAEKLKKEIENE
CHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKLLLVGLLVLFTITVLSVEIVFWYPLSGTKGQVLKEIVERFDKAHPDIKVKLVYTGKY
CHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCH
RETAQKVMSALVTKSLPNGGIIPAGPIFTGAYGNYKILEYMLYDPDFDISDFYDVAWDYA
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHH
KYKGRICAIPYNISTPVLIYNKKLMEEAGLDPNRPPETWEELLEYAKKITKDLNGDGEPD
HHCCCEEEEECCCCCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
VWGLNIKDTPWLFKAMLFQNDCEIIDADTMTPLFDGPKGVEAAAFWKKLIDEKAMPVGMH
EEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH
NLADKQFISGTLGFYMGSSSRIGKWCGKLPFEVGVAFLPKKVKRAIPIGGAVLVMFPHSK
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
EEDDAMWKLIKWLVSPENLGEFCIKTGYIPIRESVLEVPEVKKFMEENPDYRVAFEQMKY
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCEEEHHHHHC
GKAYWHFEQMGTMDYLLYEYLDKIERGILTPEEAMKEAAEKLKKEIENE
CHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]