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The map label for this gene is ylbK [H]

Identifier: 239617319

GI number: 239617319

Start: 982435

End: 983319

Strand: Reverse

Name: ylbK [H]

Synonym: Kole_0928

Alternate gene names: 239617319

Gene position: 983319-982435 (Counterclockwise)

Preceding gene: 239617320

Following gene: 239617318

Centisome position: 42.71

GC content: 42.82

Gene sequence:

>885_bases
ATGAAAAAAATGGGAGAGAAGAAATCTCGTAAATTTCTTGTACTGAGTGGTGGAGGTGCAAGAGGTGCCGCGCACGTTGG
CGTGATTCGTGCTCTTGAGGAAAGAGGATTTGTTCCTGATGCGATAATTGGTGTGAGTATAGGTGCCGTCGTCGGAGCTG
GATATGCTGTCCTGAAAGATGCAGAACTTCTCTGGGACTATTCGGTGAAAATCTACAAGCGCGCCGCTAAGTTTTTTCCT
TTTAATTTTTCTTCAGTCTCCTATGGTCGCAATCGTTTTCTTGTGAAGATAAGCTGTTCCTACATGACAAAGAAATCTTC
TGTTTTACCATCAAAATTGTATTTCAGGGTTTTCCGGAAATATCTTGGCAAACTACACTTTGAAGATTTACAGATTGAGT
TTCACTGCGTATCTACCGATCTAAAAGCCGGAAAAATTATCCTTCATTCTTCAGGGAAGCTTTTTCAGGCACTTCAAGCG
TCAATGGCAATCCCCGGAATCTTCCCTCCGGTCGTACTTGAAAACAGCATCATGGCTGATGGCGGTACGCTGAACAATCT
ACCGGCAGATATTGCAAGAGACCTTGGGGCTGATTATGTGGTTGCGGTTGATTTATCTGGAAAAAGCTATCCAATTACCA
TCCCCGAAACTTCAAACGCTTTGTTGAACGCGATGAATCTTATATGCGAGAACAGAATTCTTTCTTTTTTAAGGAAAGAA
GCAGATTTTATAATTCGTCCACCTGTCCAAGATATAGATAGTCTCGATTTCAGCCGTTGTCTTGAGATCATGGAGAAGAG
CTACGAACATACCCTTAATCTCACACTTCCTGAGGAGATGTTCGAACGAGAATACACGTCGGTGGGTTCTGTCTTCAAGG
GTTAG

Upstream 100 bases:

>100_bases
CTTGTGTCTCAGAAGAAAGAAAAGCAATAACAAGTAACCGAAATATTTTTGGAACGTCTGTACGAAATCACCCTGGAAAT
CTGGTTAGAGGAAAGGAAAA

Downstream 100 bases:

>100_bases
CTACCATACCGGTTTTAGAAAAACTTCTGTCTGAAAAAAAACAAAGATTGGAGATAATTGCTAACGGACTGGCTGGTTTC
TATGCGATTCTTTTTGAAAA

Product: Lysophospholipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKKMGEKKSRKFLVLSGGGARGAAHVGVIRALEERGFVPDAIIGVSIGAVVGAGYAVLKDAELLWDYSVKIYKRAAKFFP
FNFSSVSYGRNRFLVKISCSYMTKKSSVLPSKLYFRVFRKYLGKLHFEDLQIEFHCVSTDLKAGKIILHSSGKLFQALQA
SMAIPGIFPPVVLENSIMADGGTLNNLPADIARDLGADYVVAVDLSGKSYPITIPETSNALLNAMNLICENRILSFLRKE
ADFIIRPPVQDIDSLDFSRCLEIMEKSYEHTLNLTLPEEMFEREYTSVGSVFKG

Sequences:

>Translated_294_residues
MKKMGEKKSRKFLVLSGGGARGAAHVGVIRALEERGFVPDAIIGVSIGAVVGAGYAVLKDAELLWDYSVKIYKRAAKFFP
FNFSSVSYGRNRFLVKISCSYMTKKSSVLPSKLYFRVFRKYLGKLHFEDLQIEFHCVSTDLKAGKIILHSSGKLFQALQA
SMAIPGIFPPVVLENSIMADGGTLNNLPADIARDLGADYVVAVDLSGKSYPITIPETSNALLNAMNLICENRILSFLRKE
ADFIIRPPVQDIDSLDFSRCLEIMEKSYEHTLNLTLPEEMFEREYTSVGSVFKG
>Mature_294_residues
MKKMGEKKSRKFLVLSGGGARGAAHVGVIRALEERGFVPDAIIGVSIGAVVGAGYAVLKDAELLWDYSVKIYKRAAKFFP
FNFSSVSYGRNRFLVKISCSYMTKKSSVLPSKLYFRVFRKYLGKLHFEDLQIEFHCVSTDLKAGKIILHSSGKLFQALQA
SMAIPGIFPPVVLENSIMADGGTLNNLPADIARDLGADYVVAVDLSGKSYPITIPETSNALLNAMNLICENRILSFLRKE
ADFIIRPPVQDIDSLDFSRCLEIMEKSYEHTLNLTLPEEMFEREYTSVGSVFKG

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI148727335, Length=295, Percent_Identity=31.1864406779661, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI148727290, Length=295, Percent_Identity=31.1864406779661, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI260656039, Length=198, Percent_Identity=33.8383838383838, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI260656041, Length=198, Percent_Identity=33.8383838383838, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI116256487, Length=198, Percent_Identity=33.8383838383838, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI260656037, Length=198, Percent_Identity=33.8383838383838, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI260656043, Length=198, Percent_Identity=33.8383838383838, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI226510936, Length=294, Percent_Identity=27.2108843537415, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71997289, Length=268, Percent_Identity=29.4776119402985, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71997299, Length=268, Percent_Identity=29.4776119402985, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI193204778, Length=179, Percent_Identity=30.1675977653631, Blast_Score=88, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6323581, Length=320, Percent_Identity=29.0625, Blast_Score=112, Evalue=5e-26,
Organism=Drosophila melanogaster, GI28571388, Length=285, Percent_Identity=26.3157894736842, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281376913, Length=285, Percent_Identity=26.6666666666667, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32612; Mature: 32612

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMGEKKSRKFLVLSGGGARGAAHVGVIRALEERGFVPDAIIGVSIGAVVGAGYAVLKD
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHC
AELLWDYSVKIYKRAAKFFPFNFSSVSYGRNRFLVKISCSYMTKKSSVLPSKLYFRVFRK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECHHCCCCCCCHHHHHHHHHHH
YLGKLHFEDLQIEFHCVSTDLKAGKIILHSSGKLFQALQASMAIPGIFPPVVLENSIMAD
HHCCCCEEEEEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHCCCEECC
GGTLNNLPADIARDLGADYVVAVDLSGKSYPITIPETSNALLNAMNLICENRILSFLRKE
CCCCCCCCHHHHHHCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
ADFIIRPPVQDIDSLDFSRCLEIMEKSYEHTLNLTLPEEMFEREYTSVGSVFKG
CCEEECCCHHHHHCCCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKMGEKKSRKFLVLSGGGARGAAHVGVIRALEERGFVPDAIIGVSIGAVVGAGYAVLKD
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHC
AELLWDYSVKIYKRAAKFFPFNFSSVSYGRNRFLVKISCSYMTKKSSVLPSKLYFRVFRK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECHHCCCCCCCHHHHHHHHHHH
YLGKLHFEDLQIEFHCVSTDLKAGKIILHSSGKLFQALQASMAIPGIFPPVVLENSIMAD
HHCCCCEEEEEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHCCCEECC
GGTLNNLPADIARDLGADYVVAVDLSGKSYPITIPETSNALLNAMNLICENRILSFLRKE
CCCCCCCCHHHHHHCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
ADFIIRPPVQDIDSLDFSRCLEIMEKSYEHTLNLTLPEEMFEREYTSVGSVFKG
CCEEECCCHHHHHCCCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]