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The map label for this gene is rnfE [H]

Identifier: 239617297

GI number: 239617297

Start: 958565

End: 959188

Strand: Direct

Name: rnfE [H]

Synonym: Kole_0906

Alternate gene names: 239617297

Gene position: 958565-959188 (Clockwise)

Preceding gene: 239617296

Following gene: 239617298

Centisome position: 41.64

GC content: 44.07

Gene sequence:

>624_bases
ATGGCCGAAAAACTGAATAAGATGAAGGTCCTCACCAACGGATTCATAGCTCAGAATCCAACATATGTACAGGTTTTGGG
AATGTGTCCAACGCTTGCAACGACAACCAGCGCTGTGAATGGTTTGGGTATGGGATTGGCCACAACAGCTGTTCTCATCA
TGTCGAACGTAGTTGTTTCTCTTTTAAGAAAAGTTATTCCAAATAAAATACGTATCCCGGCTTACATAGTCATCATCGCT
TCCTTTGTTACAGTCGTAGATTTGCTAATGCATGGGTTTGTATATGACCTCTGGAAGACTCTTGGGTTGTTTATTCCACT
TATCGTTGTTAACTGTATAATTCTCGGACGTGCGGAATCCTTCGCATCGAAAAACGGCGTTTTTCTTTCATTCCTGGACG
GTCTGGGAATGGGTCTTGGATTTACCGGTTCACTTGTGCTGCTCGGAGCTGTGAGAGAGATTATCGGTAACGGTAGTGTG
TTCAATGTTCATTTGACCGATATAAAGATGTTTGCAATGGTGCTCCCACCGGGGGCTTACATTGCTCTTGGTCTGTTAGC
CGGATTGTTCAATTACATCGGTGCAAGAAGGAACAAAGCTTCGAAAGCCAAAGCCGGAAAGTGA

Upstream 100 bases:

>100_bases
AAACAAGTGACGTGATGACCGGTGCGACAATAACCCCTAGAGCTGTTGTAACTTCAATCAATGCAATGTATGAGTTTCTC
AAGAAGGCAGGTGTGAACTA

Downstream 100 bases:

>100_bases
GGTTGAGTGATTATGACGATGGGAATGGGAACAAGATTGTTCTTCATATTTCTTTCCGCTGTATTAGTTAATAACTTTGT
TCTTTCAAGGTTTCTTGGGA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAEKLNKMKVLTNGFIAQNPTYVQVLGMCPTLATTTSAVNGLGMGLATTAVLIMSNVVVSLLRKVIPNKIRIPAYIVIIA
SFVTVVDLLMHGFVYDLWKTLGLFIPLIVVNCIILGRAESFASKNGVFLSFLDGLGMGLGFTGSLVLLGAVREIIGNGSV
FNVHLTDIKMFAMVLPPGAYIALGLLAGLFNYIGARRNKASKAKAGK

Sequences:

>Translated_207_residues
MAEKLNKMKVLTNGFIAQNPTYVQVLGMCPTLATTTSAVNGLGMGLATTAVLIMSNVVVSLLRKVIPNKIRIPAYIVIIA
SFVTVVDLLMHGFVYDLWKTLGLFIPLIVVNCIILGRAESFASKNGVFLSFLDGLGMGLGFTGSLVLLGAVREIIGNGSV
FNVHLTDIKMFAMVLPPGAYIALGLLAGLFNYIGARRNKASKAKAGK
>Mature_206_residues
AEKLNKMKVLTNGFIAQNPTYVQVLGMCPTLATTTSAVNGLGMGLATTAVLIMSNVVVSLLRKVIPNKIRIPAYIVIIAS
FVTVVDLLMHGFVYDLWKTLGLFIPLIVVNCIILGRAESFASKNGVFLSFLDGLGMGLGFTGSLVLLGAVREIIGNGSVF
NVHLTDIKMFAMVLPPGAYIALGLLAGLFNYIGARRNKASKAKAGK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=208, Percent_Identity=45.6730769230769, Blast_Score=156, Evalue=8e-40,
Organism=Escherichia coli, GI1787914, Length=150, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22005; Mature: 21874

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKLNKMKVLTNGFIAQNPTYVQVLGMCPTLATTTSAVNGLGMGLATTAVLIMSNVVVS
CCCHHHHHHHHHCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRKVIPNKIRIPAYIVIIASFVTVVDLLMHGFVYDLWKTLGLFIPLIVVNCIILGRAES
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FASKNGVFLSFLDGLGMGLGFTGSLVLLGAVREIIGNGSVFNVHLTDIKMFAMVLPPGAY
HHCCCCHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCHHH
IALGLLAGLFNYIGARRNKASKAKAGK
HHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AEKLNKMKVLTNGFIAQNPTYVQVLGMCPTLATTTSAVNGLGMGLATTAVLIMSNVVVS
CCHHHHHHHHHCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRKVIPNKIRIPAYIVIIASFVTVVDLLMHGFVYDLWKTLGLFIPLIVVNCIILGRAES
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FASKNGVFLSFLDGLGMGLGFTGSLVLLGAVREIIGNGSVFNVHLTDIKMFAMVLPPGAY
HHCCCCHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCHHH
IALGLLAGLFNYIGARRNKASKAKAGK
HHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA