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The map label for this gene is rnfD [H]

Identifier: 239617295

GI number: 239617295

Start: 956903

End: 957844

Strand: Direct

Name: rnfD [H]

Synonym: Kole_0904

Alternate gene names: 239617295

Gene position: 956903-957844 (Clockwise)

Preceding gene: 239617294

Following gene: 239617296

Centisome position: 41.57

GC content: 46.18

Gene sequence:

>942_bases
GTGAAGCTAAATGTTGCAGCAGCACCTCACCTACGATCAACCAATAGCGTACGGAAGATTATGATTGATGTTCTTATAGC
GTTGTTGCCTGCCAGTGTGATGGCTGTAATACTGTTCGGTGCGAAAGCTTTGTTCCTGATAGTGTTCAGCGTTGTAACCG
CAGAACTTTTGGACTTCTTTTTCATGAGAATTCTAAGAGGCAAAAAAGATTACAGACCGGACGGTAGTGCCGCGGTTACT
GGCCTGCTTTTGGCTCTTAACCTTTCCCTGGCGGTGACATGGTGGCAAACCCTTGTTGGTATTATCGCGGCAATAGGGAT
TGCGAAAAATGTATTTGGCGGATTGGGAAAGAATATATGGAATCCAGCCCTGGTTGGACGTGTTTTCATGCTGATCTCTT
TCCCGGTACAGATGACGACCTGGTACACACCCTTTGATTTGCAAACAACCGCCACACCAATGGCGTTGTTAAAAGACGGG
AAGGAAACCATCTGGGGAATCAGAGACCTTTTCCTCGGAACGGTTCCAGGTTCTCTGGGTGAAGTGAGTGCATTATTGTT
GATTCTTGGTTTTGTATGGCTGGTAATTCGTAAAAGAATAAAGCTTATGATACCGATCGCTTATGTGGGAAGCGTAGCCT
TGATCTCGGCAATTTTCTACCTTGTGAACCCTGCATACGGGGATCCGTTGTACCACATCTTTGGTGGCGGATTAATGCTT
GGAGCGCTTTTCATGGCAACCGATATGGTCACAAGTCCTATGACACCGAAAGGGCAATGGATTTTCGGATTGGGTTGTGG
TGTAATCACCATGGTTATCCGATATTTTGGAGGTTATCCAGAGGGTGTTTCCTTCTCAATCCTGATAATGAATTCCTTTG
TGCCACTGATAGATTCTGTAACGCGCCCGAAGAGATTTGGCGAGGTGAAAGCCAATGCGTGA

Upstream 100 bases:

>100_bases
GCGGAAGTTGTTCTTATGTTTGTCCAGCAAACATTGACCTTGTCAAGAGTTTTAAGCTGGCTAAAAAGGTTTACCGTGCG
TTGAAAGGGGGAGCAAAAAA

Downstream 100 bases:

>100_bases
GTATATCAAAACAGGACTAACACTCATGTTGATAACCCTCATAGCCGGTTTGGGATTGTCACTTGTATATACACTCGTTA
AAGAACCAATAGAAAAAGCA

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKLNVAAAPHLRSTNSVRKIMIDVLIALLPASVMAVILFGAKALFLIVFSVVTAELLDFFFMRILRGKKDYRPDGSAAVT
GLLLALNLSLAVTWWQTLVGIIAAIGIAKNVFGGLGKNIWNPALVGRVFMLISFPVQMTTWYTPFDLQTTATPMALLKDG
KETIWGIRDLFLGTVPGSLGEVSALLLILGFVWLVIRKRIKLMIPIAYVGSVALISAIFYLVNPAYGDPLYHIFGGGLML
GALFMATDMVTSPMTPKGQWIFGLGCGVITMVIRYFGGYPEGVSFSILIMNSFVPLIDSVTRPKRFGEVKANA

Sequences:

>Translated_313_residues
MKLNVAAAPHLRSTNSVRKIMIDVLIALLPASVMAVILFGAKALFLIVFSVVTAELLDFFFMRILRGKKDYRPDGSAAVT
GLLLALNLSLAVTWWQTLVGIIAAIGIAKNVFGGLGKNIWNPALVGRVFMLISFPVQMTTWYTPFDLQTTATPMALLKDG
KETIWGIRDLFLGTVPGSLGEVSALLLILGFVWLVIRKRIKLMIPIAYVGSVALISAIFYLVNPAYGDPLYHIFGGGLML
GALFMATDMVTSPMTPKGQWIFGLGCGVITMVIRYFGGYPEGVSFSILIMNSFVPLIDSVTRPKRFGEVKANA
>Mature_313_residues
MKLNVAAAPHLRSTNSVRKIMIDVLIALLPASVMAVILFGAKALFLIVFSVVTAELLDFFFMRILRGKKDYRPDGSAAVT
GLLLALNLSLAVTWWQTLVGIIAAIGIAKNVFGGLGKNIWNPALVGRVFMLISFPVQMTTWYTPFDLQTTATPMALLKDG
KETIWGIRDLFLGTVPGSLGEVSALLLILGFVWLVIRKRIKLMIPIAYVGSVALISAIFYLVNPAYGDPLYHIFGGGLML
GALFMATDMVTSPMTPKGQWIFGLGCGVITMVIRYFGGYPEGVSFSILIMNSFVPLIDSVTRPKRFGEVKANA

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=351, Percent_Identity=31.9088319088319, Blast_Score=177, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34054; Mature: 34054

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNVAAAPHLRSTNSVRKIMIDVLIALLPASVMAVILFGAKALFLIVFSVVTAELLDFF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMRILRGKKDYRPDGSAAVTGLLLALNLSLAVTWWQTLVGIIAAIGIAKNVFGGLGKNIW
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPALVGRVFMLISFPVQMTTWYTPFDLQTTATPMALLKDGKETIWGIRDLFLGTVPGSLG
CHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHH
EVSALLLILGFVWLVIRKRIKLMIPIAYVGSVALISAIFYLVNPAYGDPLYHIFGGGLML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GALFMATDMVTSPMTPKGQWIFGLGCGVITMVIRYFGGYPEGVSFSILIMNSFVPLIDSV
HHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
TRPKRFGEVKANA
HCCHHHCCCCCCC
>Mature Secondary Structure
MKLNVAAAPHLRSTNSVRKIMIDVLIALLPASVMAVILFGAKALFLIVFSVVTAELLDFF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMRILRGKKDYRPDGSAAVTGLLLALNLSLAVTWWQTLVGIIAAIGIAKNVFGGLGKNIW
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NPALVGRVFMLISFPVQMTTWYTPFDLQTTATPMALLKDGKETIWGIRDLFLGTVPGSLG
CHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCHH
EVSALLLILGFVWLVIRKRIKLMIPIAYVGSVALISAIFYLVNPAYGDPLYHIFGGGLML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GALFMATDMVTSPMTPKGQWIFGLGCGVITMVIRYFGGYPEGVSFSILIMNSFVPLIDSV
HHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHH
TRPKRFGEVKANA
HCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA