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The map label for this gene is rnfC [H]

Identifier: 239617294

GI number: 239617294

Start: 955584

End: 956906

Strand: Direct

Name: rnfC [H]

Synonym: Kole_0903

Alternate gene names: 239617294

Gene position: 955584-956906 (Clockwise)

Preceding gene: 239617293

Following gene: 239617295

Centisome position: 41.51

GC content: 42.93

Gene sequence:

>1323_bases
ATGGGACTGTTGAGCTTCAAAGGTGGGGTTCATCCGCCTGAGAAAAAAACTCTTTCTGAAGATGTTCCACTATCCAGAGC
CCCACTACCAGGAAAGGTTTTTGTTTTCCTCGCCAATCATGCAGGTGTACCCGCAAAACCAATTGTTCAACCCGGTGATG
ATGTCAAAACAGGACAGAAGATCGCTGAAGCTGCTGGTTTCATCTCGGCGAATTTACATTCCCCGGTTACAGGGAAGGTT
GTGGAGATCTCCAAGATGTATCATCCTGTTCTCGGAAAACCTCAGGATGCAATTGTAATCGAAAAAACTAGCGACGATGA
CTGGGAACTCCTCGAACCAGCAAAATCGTACGAAGAATTCAGTCGAGATGAAATCATAGAAAGAATTAAAGAAGCCGGTA
TAGTTGGTCTTGGTGGAGCCACATTTCCAACCCACGTTAAATTAAATCCACCTAAGGATAAGAAAATCGACGTTCTTATA
ATTAATGGTGCTGAATGTGAGCCTTATCTTACTGTTGATTATCGTTTGATGCTGGAAATGTCAGAAAAGATTATTCGCGG
GATTCGAGCATTAATGAAGGCACTTGGGGTTGAGAAAGCAATTATAGGTATAGAAGATAACAAACCAAAAGCTATAAGAA
GAATGAAAGAAGCCGCAGGTGATGGAATTGAGGTTAGAGTTCTTAAAACTAAGTATCCCCAGGGTGCTGAAAAACAGCTT
ATTTATGCCCTTACGAAAAGAATTGTTCCGTCTGGTGGTCTTCCAATGGACGTTGGTGTTGTTGTACAAAATGTTGGAAC
TGCCTTTGCTGTTTATGAAGCTATCGAACTGGGAAAACCTCTCATCGAGAGGGCTGTTACTGTAACCGGTGAAGGAGTTA
AAAAACCCATAAACATTGTAGCGAGAATCGGGACCCTTGCCAGCGAGCTCATTGAATTGGCTGGTGGTATGGAAGCAAAC
GTCGATAGAGTTGTCTTTGGTGGTCCAATGATGGGAATAGCCGTTCCCAAAATAGATATTCCTGTGATGAAAGGAACTTC
AGGTATCACGGTAATGACAAAAGAGGTTGTAGGAGAAAGGGAAAGCTTCCCCTGTATCAGATGTGGAGGATGTGTTAAAG
CCTGCCCCATGTATCTACAACCTTTTCAGCTTTATCTTTACACCAGTAACAGGCTTTACGACAGAGCCGTTGATGAAGGA
CTTATGGACTGTATGGAATGCGGAAGTTGTTCTTATGTTTGTCCAGCAAACATTGACCTTGTCAAGAGTTTTAAGCTGGC
TAAAAAGGTTTACCGTGCGTTGAAAGGGGGAGCAAAAAAGTGA

Upstream 100 bases:

>100_bases
AAATATTTCCTGTATTATAATAGGGGCGTAAGCCCCTATTTTTCATTTCTTACCGGCGTTATCAATACATAAAATCTATT
GGATAGAAAGGTGGTAGATG

Downstream 100 bases:

>100_bases
AGCTAAATGTTGCAGCAGCACCTCACCTACGATCAACCAATAGCGTACGGAAGATTATGATTGATGTTCTTATAGCGTTG
TTGCCTGCCAGTGTGATGGC

Product: electron transport complex, RnfABCDGE type, C subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MGLLSFKGGVHPPEKKTLSEDVPLSRAPLPGKVFVFLANHAGVPAKPIVQPGDDVKTGQKIAEAAGFISANLHSPVTGKV
VEISKMYHPVLGKPQDAIVIEKTSDDDWELLEPAKSYEEFSRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKIDVLI
INGAECEPYLTVDYRLMLEMSEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEAAGDGIEVRVLKTKYPQGAEKQL
IYALTKRIVPSGGLPMDVGVVVQNVGTAFAVYEAIELGKPLIERAVTVTGEGVKKPINIVARIGTLASELIELAGGMEAN
VDRVVFGGPMMGIAVPKIDIPVMKGTSGITVMTKEVVGERESFPCIRCGGCVKACPMYLQPFQLYLYTSNRLYDRAVDEG
LMDCMECGSCSYVCPANIDLVKSFKLAKKVYRALKGGAKK

Sequences:

>Translated_440_residues
MGLLSFKGGVHPPEKKTLSEDVPLSRAPLPGKVFVFLANHAGVPAKPIVQPGDDVKTGQKIAEAAGFISANLHSPVTGKV
VEISKMYHPVLGKPQDAIVIEKTSDDDWELLEPAKSYEEFSRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKIDVLI
INGAECEPYLTVDYRLMLEMSEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEAAGDGIEVRVLKTKYPQGAEKQL
IYALTKRIVPSGGLPMDVGVVVQNVGTAFAVYEAIELGKPLIERAVTVTGEGVKKPINIVARIGTLASELIELAGGMEAN
VDRVVFGGPMMGIAVPKIDIPVMKGTSGITVMTKEVVGERESFPCIRCGGCVKACPMYLQPFQLYLYTSNRLYDRAVDEG
LMDCMECGSCSYVCPANIDLVKSFKLAKKVYRALKGGAKK
>Mature_439_residues
GLLSFKGGVHPPEKKTLSEDVPLSRAPLPGKVFVFLANHAGVPAKPIVQPGDDVKTGQKIAEAAGFISANLHSPVTGKVV
EISKMYHPVLGKPQDAIVIEKTSDDDWELLEPAKSYEEFSRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKIDVLII
NGAECEPYLTVDYRLMLEMSEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEAAGDGIEVRVLKTKYPQGAEKQLI
YALTKRIVPSGGLPMDVGVVVQNVGTAFAVYEAIELGKPLIERAVTVTGEGVKKPINIVARIGTLASELIELAGGMEANV
DRVVFGGPMMGIAVPKIDIPVMKGTSGITVMTKEVVGERESFPCIRCGGCVKACPMYLQPFQLYLYTSNRLYDRAVDEGL
MDCMECGSCSYVCPANIDLVKSFKLAKKVYRALKGGAKK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=443, Percent_Identity=41.3092550790068, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47621; Mature: 47489

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLSFKGGVHPPEKKTLSEDVPLSRAPLPGKVFVFLANHAGVPAKPIVQPGDDVKTGQK
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH
IAEAAGFISANLHSPVTGKVVEISKMYHPVLGKPQDAIVIEKTSDDDWELLEPAKSYEEF
HHHHHHHHCCCCCCCCCCCEEEHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKIDVLIINGAECEPYLTVDYRLMLEM
HHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCCEEEEEEEECCCCCCEEEEHHHHHHHH
SEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEAAGDGIEVRVLKTKYPQGAEKQL
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
IYALTKRIVPSGGLPMDVGVVVQNVGTAFAVYEAIELGKPLIERAVTVTGEGVKKPINIV
HHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHEECCCCHHHHHHHH
ARIGTLASELIELAGGMEANVDRVVFGGPMMGIAVPKIDIPVMKGTSGITVMTKEVVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCCCEEEEHHHHCCC
ESFPCIRCGGCVKACPMYLQPFQLYLYTSNRLYDRAVDEGLMDCMECGSCSYVCPANIDL
CCCCEEEECCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEECCCCHHH
VKSFKLAKKVYRALKGGAKK
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GLLSFKGGVHPPEKKTLSEDVPLSRAPLPGKVFVFLANHAGVPAKPIVQPGDDVKTGQK
CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH
IAEAAGFISANLHSPVTGKVVEISKMYHPVLGKPQDAIVIEKTSDDDWELLEPAKSYEEF
HHHHHHHHCCCCCCCCCCCEEEHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
SRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKIDVLIINGAECEPYLTVDYRLMLEM
HHHHHHHHHHHCCEEEECCCCCCCEEEECCCCCCEEEEEEEECCCCCCEEEEHHHHHHHH
SEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEAAGDGIEVRVLKTKYPQGAEKQL
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
IYALTKRIVPSGGLPMDVGVVVQNVGTAFAVYEAIELGKPLIERAVTVTGEGVKKPINIV
HHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCHHHHHHHHEECCCCHHHHHHHH
ARIGTLASELIELAGGMEANVDRVVFGGPMMGIAVPKIDIPVMKGTSGITVMTKEVVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCCCEEEEHHHHCCC
ESFPCIRCGGCVKACPMYLQPFQLYLYTSNRLYDRAVDEGLMDCMECGSCSYVCPANIDL
CCCCEEEECCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEECCCCHHH
VKSFKLAKKVYRALKGGAKK
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]