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The map label for this gene is yvyD [H]

Identifier: 239616947

GI number: 239616947

Start: 595944

End: 596480

Strand: Direct

Name: yvyD [H]

Synonym: Kole_0545

Alternate gene names: 239616947

Gene position: 595944-596480 (Clockwise)

Preceding gene: 239616946

Following gene: 239616948

Centisome position: 25.89

GC content: 37.99

Gene sequence:

>537_bases
ATGAAGTACAACATCTACGCCAAGGACATACCAGTAACTGATACCATGAAGGAGCACATTGATAAGAAACTCGCCAAGGT
TTTCAGAGCAATTGATGAAGATCATTTCACCTCAATGGACGTTAGAGTCATGAAAGAAAGGGGGCTTTATAAAGTAGAAA
TAACCGGTCATCTCCCCGGTTTTGTTGTTAGAGTAGAAGAAAGAGGCGACGACTTTTATGGTGTTGTAGAAGCAATAGCA
AACACCCTTGAAAGAAGGATTAAACGTTATAAAGAAAGAGCGAGAATGAGACATAGAGCAAGTGCTAAAGAGATCCTGGA
GGCTATTCCGGAAGTTCCTGATGAGGAAGAAAGAGGACTTCAAATAACCCGTACGAAGCGTTTTTCTATAAAACCTATGA
AAATCGATGAAGCACTCTTACAAATGGAAATGCTTGGTCATACATTTTTTGTATTTAGAAACGTAGACACTGATGAAGTT
AACGTTCTGTACTTAAGAAAAAATGGTACAGTTGGTTTAATAGAAATGTCAGAATAA

Upstream 100 bases:

>100_bases
GGAAACTACATCGTGGAAGGATGAAACTGTATCAAACTTCAACGAGTCAAACGTATTAGATCCAGTTCTTCAACGTTTAT
TTTAAGAAAGGAGGGTTATT

Downstream 100 bases:

>100_bases
TCAAAAAATTTGAACTACCTGATCAGGCCGCTTTTTGCGGCCTGGTTTTAAACAAATAAAGTGGAGGTGAATGGAGATCA
CAAAAAAGAAAAGAACGCAG

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPGFVVRVEERGDDFYGVVEAIA
NTLERRIKRYKERARMRHRASAKEILEAIPEVPDEEERGLQITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDTDEV
NVLYLRKNGTVGLIEMSE

Sequences:

>Translated_178_residues
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPGFVVRVEERGDDFYGVVEAIA
NTLERRIKRYKERARMRHRASAKEILEAIPEVPDEEERGLQITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDTDEV
NVLYLRKNGTVGLIEMSE
>Mature_178_residues
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPGFVVRVEERGDDFYGVVEAIA
NTLERRIKRYKERARMRHRASAKEILEAIPEVPDEEERGLQITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDTDEV
NVLYLRKNGTVGLIEMSE

Specific function: Unknown

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20894; Mature: 20894

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCE
FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMRHRASAKEILEAIPEVPDEEERGL
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCE
QITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDTDEVNVLYLRKNGTVGLIEMSE
EEEEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEEECC
>Mature Secondary Structure
MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFTSMDVRVMKERGLYKVEITGHLPG
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCE
FVVRVEERGDDFYGVVEAIANTLERRIKRYKERARMRHRASAKEILEAIPEVPDEEERGL
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCE
QITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDTDEVNVLYLRKNGTVGLIEMSE
EEEEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]