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The map label for this gene is araR [H]

Identifier: 239616889

GI number: 239616889

Start: 522656

End: 523711

Strand: Direct

Name: araR [H]

Synonym: Kole_0484

Alternate gene names: 239616889

Gene position: 522656-523711 (Clockwise)

Preceding gene: 239616888

Following gene: 239616891

Centisome position: 22.7

GC content: 39.11

Gene sequence:

>1056_bases
TTGACACCGAAAGCTCCTTATAAACTAATCATCGACTTTCTTAGAGAAGAACTGAAAACAAAATACTCTCCCGGTGACAA
GATCCCATCTGAAAACGAGCTCGCCAAGATGTTCGGAGTGAGCAGGTTAACCGCAAGAAAAGCTGTTGAAAAGCTAACGG
ACGAGGGCCTTCTTGTCAGAATACCGGGTATCGGAACTTTTGTCTCTGAGATCTCCAAACTTGCGAAAAACAAAGTAACT
TACGTCGGCGTCGCGATTGGAAATGTTGCTGATGTAAGAGGAGAAGCGATGGTATCAAAAATAGTCAAAACGTTGAGAGA
CTTCTCTGTCCATGCTATATTCGTAGACATTGGAAAAAGCTATTCCGAGGATTTTGAAAAAAAGCTTTCCCGTCTTCTGG
ACGAAAATGTCTCTGGACTTATAATATCACCTATAAAAAATCTTGAGGAAAGCCATACTTTCAAGAAGTTTATAGAAAAA
AAACTACCCATAGTTTTCATAGACAGAACCATATCCGGTTTTGAAGAGATTCCTTTTGTAGAGTCAAACAACTACCACGG
AGGCTATCTACTCGGAGAACACCTTAAAAATGTTCATGACTCAAAAAAAGCAATATTCGTTACCGAAGAAGGGATGGACA
TTTTCAGCGTTAAAGAAAGATACAACGGCTTCAAGAATGCTTTTGAAAAACATGTAGATGTTCTTTTTGTAGAGGATATA
GAAGATATGCGGGACAAATTCATCAAAACAATAAAAGAAGGAAAATACGATTCCATATTCTTCTGTCACGATCTTTTAGC
ATTATCCGGAATAACCTCACTCATGATGAATGGAATAAGGATTCCGGAAGATATAAGAGTGGTCGGTTTTGACGATAGAA
TCATATCCAAATACACCTTTCCTCACATTACCACAGTAAGACAAAACTTCAGCGAAATGGGAAAAGTGGCAGCATTGTTC
ATGGTAAAGCTCCTAAAGGGAGAAAAGATTCCCAGAGCCGAACACATCCCGGTAAAATTAGTGATAAGAGAATCCTGCGG
TTGCTCTACCAAATGA

Upstream 100 bases:

>100_bases
ATCATCAAAGGTACGAAACTCGTATTTGAAATGTCTGCAAAACCAGATTTTTCCTGGGGACTAGAAAATGTACCCATGGA
ATAATGGAGGGATACTTAAA

Downstream 100 bases:

>100_bases
ATCAGCATTGAGTTTTTTCCAAGGATTATAGTCAAAAATTCAAGTATCATAACATTATAAGAACTTCGTCGCTTTCAAAA
CCCAAAATCCTAAATTTTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTPKAPYKLIIDFLREELKTKYSPGDKIPSENELAKMFGVSRLTARKAVEKLTDEGLLVRIPGIGTFVSEISKLAKNKVT
YVGVAIGNVADVRGEAMVSKIVKTLRDFSVHAIFVDIGKSYSEDFEKKLSRLLDENVSGLIISPIKNLEESHTFKKFIEK
KLPIVFIDRTISGFEEIPFVESNNYHGGYLLGEHLKNVHDSKKAIFVTEEGMDIFSVKERYNGFKNAFEKHVDVLFVEDI
EDMRDKFIKTIKEGKYDSIFFCHDLLALSGITSLMMNGIRIPEDIRVVGFDDRIISKYTFPHITTVRQNFSEMGKVAALF
MVKLLKGEKIPRAEHIPVKLVIRESCGCSTK

Sequences:

>Translated_351_residues
MTPKAPYKLIIDFLREELKTKYSPGDKIPSENELAKMFGVSRLTARKAVEKLTDEGLLVRIPGIGTFVSEISKLAKNKVT
YVGVAIGNVADVRGEAMVSKIVKTLRDFSVHAIFVDIGKSYSEDFEKKLSRLLDENVSGLIISPIKNLEESHTFKKFIEK
KLPIVFIDRTISGFEEIPFVESNNYHGGYLLGEHLKNVHDSKKAIFVTEEGMDIFSVKERYNGFKNAFEKHVDVLFVEDI
EDMRDKFIKTIKEGKYDSIFFCHDLLALSGITSLMMNGIRIPEDIRVVGFDDRIISKYTFPHITTVRQNFSEMGKVAALF
MVKLLKGEKIPRAEHIPVKLVIRESCGCSTK
>Mature_350_residues
TPKAPYKLIIDFLREELKTKYSPGDKIPSENELAKMFGVSRLTARKAVEKLTDEGLLVRIPGIGTFVSEISKLAKNKVTY
VGVAIGNVADVRGEAMVSKIVKTLRDFSVHAIFVDIGKSYSEDFEKKLSRLLDENVSGLIISPIKNLEESHTFKKFIEKK
LPIVFIDRTISGFEEIPFVESNNYHGGYLLGEHLKNVHDSKKAIFVTEEGMDIFSVKERYNGFKNAFEKHVDVLFVEDIE
DMRDKFIKTIKEGKYDSIFFCHDLLALSGITSLMMNGIRIPEDIRVVGFDDRIISKYTFPHITTVRQNFSEMGKVAALFM
VKLLKGEKIPRAEHIPVKLVIRESCGCSTK

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788474, Length=286, Percent_Identity=23.7762237762238, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789202, Length=292, Percent_Identity=23.972602739726, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39781; Mature: 39650

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPKAPYKLIIDFLREELKTKYSPGDKIPSENELAKMFGVSRLTARKAVEKLTDEGLLVR
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IPGIGTFVSEISKLAKNKVTYVGVAIGNVADVRGEAMVSKIVKTLRDFSVHAIFVDIGKS
ECCCHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
YSEDFEKKLSRLLDENVSGLIISPIKNLEESHTFKKFIEKKLPIVFIDRTISGFEEIPFV
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCE
ESNNYHGGYLLGEHLKNVHDSKKAIFVTEEGMDIFSVKERYNGFKNAFEKHVDVLFVEDI
ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEHHHH
EDMRDKFIKTIKEGKYDSIFFCHDLLALSGITSLMMNGIRIPEDIRVVGFDDRIISKYTF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHCC
PHITTVRQNFSEMGKVAALFMVKLLKGEKIPRAEHIPVKLVIRESCGCSTK
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
TPKAPYKLIIDFLREELKTKYSPGDKIPSENELAKMFGVSRLTARKAVEKLTDEGLLVR
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IPGIGTFVSEISKLAKNKVTYVGVAIGNVADVRGEAMVSKIVKTLRDFSVHAIFVDIGKS
ECCCHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
YSEDFEKKLSRLLDENVSGLIISPIKNLEESHTFKKFIEKKLPIVFIDRTISGFEEIPFV
HHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCE
ESNNYHGGYLLGEHLKNVHDSKKAIFVTEEGMDIFSVKERYNGFKNAFEKHVDVLFVEDI
ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEHHHH
EDMRDKFIKTIKEGKYDSIFFCHDLLALSGITSLMMNGIRIPEDIRVVGFDDRIISKYTF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHCC
PHITTVRQNFSEMGKVAALFMVKLLKGEKIPRAEHIPVKLVIRESCGCSTK
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA