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The map label for this gene is yccM [H]

Identifier: 239616810

GI number: 239616810

Start: 423801

End: 425363

Strand: Reverse

Name: yccM [H]

Synonym: Kole_0403

Alternate gene names: 239616810

Gene position: 425363-423801 (Counterclockwise)

Preceding gene: 239616814

Following gene: 239616809

Centisome position: 18.48

GC content: 40.05

Gene sequence:

>1563_bases
ATGAAGGTTCAAAGGTTGAGACTCTGGATTCAGATTTTTTTTGTGGCGTTGATCGTATTCATATCTGTAGGCCACTATCT
TGATGAAAAAAACATTTACACAATCCCGGGTGTTGCGAGTATTCATGCGATTTGTCCCTTTGGCGGGGTTGTGACGATGT
ACAATTTTGTAACTACCGGTGACTACGTTAAAAAACTTCACCAGTCGAATTTCATCATGATCCTGGCACTCATAATTCTC
CTGGTTCTTACGGGGGCGTCATTCTGTGGTTGGATCTGTCCACTTGGAAGTGTTCAGGAGTGGTTCGGTAAGCTTGGAAG
AAAAATATTTAGAAAGCATTACAATAAAGTACCGAAGAAACTGGATAAGGTACTTAGATTTGGTAAGTATTTTGTGCTTG
GCTACATCGTAATTCAAACCGCGAGAACAGTCAACCTTGTCTTTGCTGATTTTGACCCGTATTACAATCTATTCAACATA
TGGACCGACGAAATAGCGTTGTCAGGATACATTGTAGTTGCGTTGACATTAGGATTATCCTTGCTCATAGAACGACCATT
TTGTAGATATGCCTGTCCCCTTGGAGCTATCAATGGGCTTTTCAATTCTTTCAGCTTGTTGAATATAAAGCGCTATGAAA
ACACCTGTGTAAACTGTGGACAATGTGATAGAGCTTGTCCGGTTGGAATTGTTGTGTCCAAAACAGACGCACTTAGAAGC
CCAAGTTGTATTAGATGTCTCAAATGTGTGGAAAGCTGTCCAATCAATGAAAAGAATAAAGACACGCTCAAGTTGGATCT
TATCCCGGCAAAGAAAGAAAAGAAGCCAAGAAAGGTGATTCCGAATACTGCCTATGTTGTTCTTGTGTTAGTTGCCTTTA
TTGCCCCAATAGCGATAGCAATGGCCAATGGTGCTTTTATAACTGAAAGAATAAAAACTTACGAGACAACGGACGACATA
CGTGGGTCTTCAACATTACAGGAAATACTTGATCACTACGATGTATCTAAAGGTGTGTTGTACGGTTCTTTGGGAATACC
TCAGAGCATTCCGACTGAAACAAAGCTAAAGGATTTGGCTGAGTTAATAGGAATCCCTGAAGAGGAGGAAATTATTTCTC
CGGAAGTGATTAGAACAGCTGTGGAAGTAATAAACCAACCGGTGGAAGAGTTGTACTCTGTCGCAAATATAGATTCATCA
GAATTATCTGAAATAATTAAAAATGCAGGTCTTGATGAAGGAGCTACTGTGAAACAACTTGTTATGAAATCTGAGCCAGG
TGTTTTAGCATATATCATTAGTGGCAAATGGCCATCCGATTATATTGCGCAGACTGGTGAAGATGAACTGGTGTATCAAC
CCGAAAAAGAAACGACAGAAGTCAGTATAAAGGGTTCCACCACCCTGGGAGAAATAAAAGAACTGGTACCAGATTTTGAA
GCTTTCTTACAGGAATTCGGTATATCAGAAGATGAACCGTTGACCGCTATGTTGAAGGATTTGAAATCAAAATATGGTTT
TGAAATTTCGGCGATTCGGGAATATGTGGATAGTCAGCAGTAA

Upstream 100 bases:

>100_bases
AAGGATTTTCTAAGTAATATCTAAGCTTTTTTTAAGCTTAAAATACTAGGATACGATAAGTGAAAAACATCACATTATTT
TTGGATTCAGGAGGGAGAGT

Downstream 100 bases:

>100_bases
AGCTCCCCCTGAATCAACGGGCCATTTAGGCCCGTTTTTATTTGGTAGATTCTTGAGTTTTATTCTACGTTTTTCACGGG
CTGGATCAAAAATGCGAAGG

Product: 4Fe-4S ferredoxin iron-sulfur binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKVQRLRLWIQIFFVALIVFISVGHYLDEKNIYTIPGVASIHAICPFGGVVTMYNFVTTGDYVKKLHQSNFIMILALIIL
LVLTGASFCGWICPLGSVQEWFGKLGRKIFRKHYNKVPKKLDKVLRFGKYFVLGYIVIQTARTVNLVFADFDPYYNLFNI
WTDEIALSGYIVVALTLGLSLLIERPFCRYACPLGAINGLFNSFSLLNIKRYENTCVNCGQCDRACPVGIVVSKTDALRS
PSCIRCLKCVESCPINEKNKDTLKLDLIPAKKEKKPRKVIPNTAYVVLVLVAFIAPIAIAMANGAFITERIKTYETTDDI
RGSSTLQEILDHYDVSKGVLYGSLGIPQSIPTETKLKDLAELIGIPEEEEIISPEVIRTAVEVINQPVEELYSVANIDSS
ELSEIIKNAGLDEGATVKQLVMKSEPGVLAYIISGKWPSDYIAQTGEDELVYQPEKETTEVSIKGSTTLGEIKELVPDFE
AFLQEFGISEDEPLTAMLKDLKSKYGFEISAIREYVDSQQ

Sequences:

>Translated_520_residues
MKVQRLRLWIQIFFVALIVFISVGHYLDEKNIYTIPGVASIHAICPFGGVVTMYNFVTTGDYVKKLHQSNFIMILALIIL
LVLTGASFCGWICPLGSVQEWFGKLGRKIFRKHYNKVPKKLDKVLRFGKYFVLGYIVIQTARTVNLVFADFDPYYNLFNI
WTDEIALSGYIVVALTLGLSLLIERPFCRYACPLGAINGLFNSFSLLNIKRYENTCVNCGQCDRACPVGIVVSKTDALRS
PSCIRCLKCVESCPINEKNKDTLKLDLIPAKKEKKPRKVIPNTAYVVLVLVAFIAPIAIAMANGAFITERIKTYETTDDI
RGSSTLQEILDHYDVSKGVLYGSLGIPQSIPTETKLKDLAELIGIPEEEEIISPEVIRTAVEVINQPVEELYSVANIDSS
ELSEIIKNAGLDEGATVKQLVMKSEPGVLAYIISGKWPSDYIAQTGEDELVYQPEKETTEVSIKGSTTLGEIKELVPDFE
AFLQEFGISEDEPLTAMLKDLKSKYGFEISAIREYVDSQQ
>Mature_520_residues
MKVQRLRLWIQIFFVALIVFISVGHYLDEKNIYTIPGVASIHAICPFGGVVTMYNFVTTGDYVKKLHQSNFIMILALIIL
LVLTGASFCGWICPLGSVQEWFGKLGRKIFRKHYNKVPKKLDKVLRFGKYFVLGYIVIQTARTVNLVFADFDPYYNLFNI
WTDEIALSGYIVVALTLGLSLLIERPFCRYACPLGAINGLFNSFSLLNIKRYENTCVNCGQCDRACPVGIVVSKTDALRS
PSCIRCLKCVESCPINEKNKDTLKLDLIPAKKEKKPRKVIPNTAYVVLVLVAFIAPIAIAMANGAFITERIKTYETTDDI
RGSSTLQEILDHYDVSKGVLYGSLGIPQSIPTETKLKDLAELIGIPEEEEIISPEVIRTAVEVINQPVEELYSVANIDSS
ELSEIIKNAGLDEGATVKQLVMKSEPGVLAYIISGKWPSDYIAQTGEDELVYQPEKETTEVSIKGSTTLGEIKELVPDFE
AFLQEFGISEDEPLTAMLKDLKSKYGFEISAIREYVDSQQ

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=315, Percent_Identity=27.3015873015873, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58071; Mature: 58071

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00435 PEROXIDASE_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVQRLRLWIQIFFVALIVFISVGHYLDEKNIYTIPGVASIHAICPFGGVVTMYNFVTTG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHCCH
DYVKKLHQSNFIMILALIILLVLTGASFCGWICPLGSVQEWFGKLGRKIFRKHYNKVPKK
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDKVLRFGKYFVLGYIVIQTARTVNLVFADFDPYYNLFNIWTDEIALSGYIVVALTLGLS
HHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIERPFCRYACPLGAINGLFNSFSLLNIKRYENTCVNCGQCDRACPVGIVVSKTDALRS
HHHCCCHHHHHCCHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCCCEEEECCHHCCC
PSCIRCLKCVESCPINEKNKDTLKLDLIPAKKEKKPRKVIPNTAYVVLVLVAFIAPIAIA
CHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
MANGAFITERIKTYETTDDIRGSSTLQEILDHYDVSKGVLYGSLGIPQSIPTETKLKDLA
HHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHH
ELIGIPEEEEIISPEVIRTAVEVINQPVEELYSVANIDSSELSEIIKNAGLDEGATVKQL
HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
VMKSEPGVLAYIISGKWPSDYIAQTGEDELVYQPEKETTEVSIKGSTTLGEIKELVPDFE
HHCCCCCEEEEEECCCCCHHHHHCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHH
AFLQEFGISEDEPLTAMLKDLKSKYGFEISAIREYVDSQQ
HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKVQRLRLWIQIFFVALIVFISVGHYLDEKNIYTIPGVASIHAICPFGGVVTMYNFVTTG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCHHHHHHHHHCCH
DYVKKLHQSNFIMILALIILLVLTGASFCGWICPLGSVQEWFGKLGRKIFRKHYNKVPKK
HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDKVLRFGKYFVLGYIVIQTARTVNLVFADFDPYYNLFNIWTDEIALSGYIVVALTLGLS
HHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIERPFCRYACPLGAINGLFNSFSLLNIKRYENTCVNCGQCDRACPVGIVVSKTDALRS
HHHCCCHHHHHCCHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCCCEEEECCHHCCC
PSCIRCLKCVESCPINEKNKDTLKLDLIPAKKEKKPRKVIPNTAYVVLVLVAFIAPIAIA
CHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
MANGAFITERIKTYETTDDIRGSSTLQEILDHYDVSKGVLYGSLGIPQSIPTETKLKDLA
HHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHH
ELIGIPEEEEIISPEVIRTAVEVINQPVEELYSVANIDSSELSEIIKNAGLDEGATVKQL
HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
VMKSEPGVLAYIISGKWPSDYIAQTGEDELVYQPEKETTEVSIKGSTTLGEIKELVPDFE
HHCCCCCEEEEEECCCCCHHHHHCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHH
AFLQEFGISEDEPLTAMLKDLKSKYGFEISAIREYVDSQQ
HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]