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The map label for this gene is ycaJ [C]

Identifier: 239616608

GI number: 239616608

Start: 226509

End: 227792

Strand: Reverse

Name: ycaJ [C]

Synonym: Kole_0201

Alternate gene names: 239616608

Gene position: 227792-226509 (Counterclockwise)

Preceding gene: 239616609

Following gene: 239616607

Centisome position: 9.89

GC content: 49.22

Gene sequence:

>1284_bases
GTGCCTCTGAGTGAGCGCCTGAGGCCCCGCAACTTTGACGATCTGGTTGGCCAGGAACACCTTACCGGAAAAAACGGGAT
AATCCGCCGGGCAGTAGAAAGCGGATATGTGTTCTCAATGATCCTGTTTGGCCCTCCGGGATCGGGTAAAACAACGATCG
CGAGGCTCATTAAAGAGTCGTTGGCAGATGACAAATACGAGTTCGTCGCTTTCAGCGCAAGCCTGCAGGGAACAGCGGAT
CTAAAGAAAATCTTCGAGAGGGCGAGGCAACTAAGGAAATACGGTAAACATCTCGTCCTCTTCGTAGATGAAATCCACAG
GCTCAACAAAACGCAGCAGGATGTCTTCCTTCCAGTGGTTGAAGATGGAACAGTTACCCTGATCGGTGCTACTACGGAAA
ATCCGAGTTTCGAAGTCAATCCAGCGCTTCTTTCCCGGTGCCGGTTGCTCGTGTTAAGGCAGCTTTCACCGGAAGATACG
GTTCAACTCCTTCACAGAGCCCTTGAGAAAGACGAAAGACTTTCATCGCTGGACATAGCCATATCAGAAGAGCTTATAAG
GATATTGGCAGAAAATGCCGGCGGAGATGCGCGGGTCGCACTGAATTTTCTTGAAACGCTCTATGAAAACGCCGCCGCCA
TGGGCTACAAAGAACTGAATGTTGACATACTCGACGAACTGCCCATCATATCCCATAAGCGTTACAGAAAAGCTGGAGAA
GAACATTATGACCTCATCTCAGCTTTCATAAAAAGCATGCGCGGCAGCGATCCGGATGCCGCCGTTTATTACATGATGCG
CATGATTGAAGCGGGCGAGGATCCAAAATTCATAGCCCGAAGGATGGTTATACTTGCTTCTGAAGATATAGGATTGGCCG
ATCCCATGGCCCTGCTGGTCGCTGTGGCAGCTTTTCAGGCTGTGGAGAGGGTGGGCCTTCCCGAATGTACCCTGAATCTT
TCCGAGGCGGCGATCTATCTTTCCGTTGCCTCAAAGAGCAACTCTGTATATCTCGCGCAGAAAGCCGCTCAGGAAGTCAT
AAAAAAACATCCCAACTTAGAGGTCCCCTTGAAACTGCGAAACCCGGTTACAGACATGATGAAGAAAATGGGTTACGGGA
AAGACTACAACTACCCCCATGATTTCGGTGGTTTTTCCCGGGAGCTGTATTTGCCAGACAAAATAAAAAACATGGTTTTC
TACAAACCCACGGAAAACGGCAGGGAAAAGAGCGTAAAAGCCCGCCTTGAACAGCTATGGAAAGGATTGAAGAAATTCGA
GTGA

Upstream 100 bases:

>100_bases
TTGAAGTGGGACAAAGCGAAAGAGCTCATGGGCTGGGAACCCACTGTGAAACTCGAAGATGGGCTGGTGAAAACAGTTGA
GTTCTTCAGAACAGAAATGG

Downstream 100 bases:

>100_bases
TACACAGGGTATAGAAAAACCGTTGTTGGTTTTTCGTTCTACTCCACAACCCGTCATCCTGAACTTGATTCAGGATCTCT
CCTTATCAACTGCGAAGCGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MPLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKESLADDKYEFVAFSASLQGTAD
LKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVVEDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDT
VQLLHRALEKDERLSSLDIAISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDILDELPIISHKRYRKAGE
EHYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDPKFIARRMVILASEDIGLADPMALLVAVAAFQAVERVGLPECTLNL
SEAAIYLSVASKSNSVYLAQKAAQEVIKKHPNLEVPLKLRNPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPDKIKNMVF
YKPTENGREKSVKARLEQLWKGLKKFE

Sequences:

>Translated_427_residues
MPLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKESLADDKYEFVAFSASLQGTAD
LKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVVEDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDT
VQLLHRALEKDERLSSLDIAISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDILDELPIISHKRYRKAGE
EHYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDPKFIARRMVILASEDIGLADPMALLVAVAAFQAVERVGLPECTLNL
SEAAIYLSVASKSNSVYLAQKAAQEVIKKHPNLEVPLKLRNPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPDKIKNMVF
YKPTENGREKSVKARLEQLWKGLKKFE
>Mature_426_residues
PLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKESLADDKYEFVAFSASLQGTADL
KKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVVEDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDTV
QLLHRALEKDERLSSLDIAISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDILDELPIISHKRYRKAGEE
HYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDPKFIARRMVILASEDIGLADPMALLVAVAAFQAVERVGLPECTLNLS
EAAIYLSVASKSNSVYLAQKAAQEVIKKHPNLEVPLKLRNPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPDKIKNMVFY
KPTENGREKSVKARLEQLWKGLKKFE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=40.8256880733945, Blast_Score=314, Evalue=1e-85,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=36.2385321100917, Blast_Score=257, Evalue=2e-68,
Organism=Homo sapiens, GI6677723, Length=215, Percent_Identity=27.4418604651163, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI194306571, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI194306567, Length=213, Percent_Identity=27.2300469483568, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=45.6264775413712, Blast_Score=360, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17541988, Length=233, Percent_Identity=31.7596566523605, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=40.4705882352941, Blast_Score=290, Evalue=4e-79,
Organism=Saccharomyces cerevisiae, GI6324039, Length=283, Percent_Identity=25.4416961130742, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647857, Length=286, Percent_Identity=23.7762237762238, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 48130; Mature: 47999

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKES
CCCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHH
LADDKYEFVAFSASLQGTADLKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVV
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCHHEEEEEE
EDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDTVQLLHRALEKDERLSSLDIA
CCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDILDELPIISHKRYRKAGE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCHHHHHHCCH
EHYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDPKFIARRMVILASEDIGLADPMALLV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCHHHHHH
AVAAFQAVERVGLPECTLNLSEAAIYLSVASKSNSVYLAQKAAQEVIKKHPNLEVPLKLR
HHHHHHHHHHCCCCHHEEEHHHHEEEEEEECCCCCEEHHHHHHHHHHHHCCCCEEEEEEC
NPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPDKIKNMVFYKPTENGREKSVKARLEQLW
CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHCCCEEECCCCCCHHHHHHHHHHHHH
KGLKKFE
HHHHCCC
>Mature Secondary Structure 
PLSERLRPRNFDDLVGQEHLTGKNGIIRRAVESGYVFSMILFGPPGSGKTTIARLIKES
CCCCCCCCCCCHHHCCCHHCCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHH
LADDKYEFVAFSASLQGTADLKKIFERARQLRKYGKHLVLFVDEIHRLNKTQQDVFLPVV
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCHHEEEEEE
EDGTVTLIGATTENPSFEVNPALLSRCRLLVLRQLSPEDTVQLLHRALEKDERLSSLDIA
CCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISEELIRILAENAGGDARVALNFLETLYENAAAMGYKELNVDILDELPIISHKRYRKAGE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCHHHHHHCCH
EHYDLISAFIKSMRGSDPDAAVYYMMRMIEAGEDPKFIARRMVILASEDIGLADPMALLV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCHHHHHH
AVAAFQAVERVGLPECTLNLSEAAIYLSVASKSNSVYLAQKAAQEVIKKHPNLEVPLKLR
HHHHHHHHHHCCCCHHEEEHHHHEEEEEEECCCCCEEHHHHHHHHHHHHCCCCEEEEEEC
NPVTDMMKKMGYGKDYNYPHDFGGFSRELYLPDKIKNMVFYKPTENGREKSVKARLEQLW
CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHCCCEEECCCCCCHHHHHHHHHHHHH
KGLKKFE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]