| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is yhdJ [C]
Identifier: 239616473
GI number: 239616473
Start: 76258
End: 78309
Strand: Reverse
Name: yhdJ [C]
Synonym: Kole_0062
Alternate gene names: 239616473
Gene position: 78309-76258 (Counterclockwise)
Preceding gene: 239616474
Following gene: 239616472
Centisome position: 3.4
GC content: 33.19
Gene sequence:
>2052_bases ATGACATTGATGGAAGAATTGAAAGAACTCTTAAAGGAAGATACGCGGTTTGTCGATACTGAAGGAAAACTATTAAAAAA CAAAATAGTAGAACATGCTTTGAAACTTGATAAGGGTTTGATAAAACTTCTATTAAAAAACAAACGGATAAAGGAACATT TCTTCAAGGATGTAGATGGTGTTTTAGTTTTTGACAAAGAGAAGTTTATGAAATTCATTGATAACAAAGAATTTTTACCG GATTCATATACTGCTTTTAAAAATAAAATTGGTCTTGCTAATAAGGAAGGAAAGTATTTAGCAAAAAGCAAAGAAATTGT TTTGGTATGGCCCTATAAAGATTGTGTTCTTGAAGGTGGGCAGGAAAAATCTGATGAAAAAAGAAAAGAAATTTTTCATA ATGTAATTCTTGCTCCGGATGAGATTGATAGATTATTAGAACCTAAGGTATTTACTAATTTTAAAAGAATAGATAAAGAC GGAGAACACCAGCTTGACGGATTCAGGAGAGATGATGAGATAAACAGGAAAAGAGGACTGCCCGAAGATACGATAACAGA TAATTTGATTATTAAAGGAAATAATCTTCTTGTATTATATTCGCTTTTAAAAGAATTTAGAGGGAAGGTGAAGCTAATTT ATATTGACCCCCCTTACAATACAGGGAGTGATGAATTTCAATATAATGATAATTTCAGACACTCTACTTGGCTTACTTTT ATGAAAAATAGACTAGAAGTTGCAAAAGAACTATTAAAAGATGATGGGGCTATTTTTGTTCAATTAGATCATCATGAAAT AGGATATCTAAACGTTCTGATGGATGAAACTTTCGGAAGGGGCAATAAGGTTCAGATAATTGCCATTAAGACGGCATCCC CTGCTGGATTCAAAGTTGTAAATCCTGGTCCAATAGATGTAACAGAGTATATACTATTTTATGCCAGAGATAAAAAGAAG TTTAATTTTAAACTCCAATATGTAGAAGTAGAATATCATGAGAATTATGATCGTGTTATTCTTAATTTTGAAGATAAACC TGAAAATTGGAAGTTAGAATCAATCAAAAAAGTTGTCTTAGAAGAAAATGGAATTCCTGTAACAGGCTCTCTGAGAAAAG CATACAAAGAAGCCCAAAGACGGTGGGGCAAATATTGGAAGATTATTTTTAATCAATTAATTGCAGAATTTGCCTTGAGG AACAAAGAACGAATTGTAAGTATTAGAGACCCTCACAAACCTTCTGAAAGTTTGAAACAACTTTTGATAAAATCTAAAAA GGAGAGAGACAGGATTTTTGTATATGGAAGAGAAGGTGCAGACCCAATATTTGTAATAAACGGTGGTGCATTAGCATTTT ATAAAAATAAGGTAAAAAATATTGGTGGCAGAGAAGTGCCAACAGAGTTATTAACAGATTTTTGGGGAGATATAAGTTGG GCAGGCATAGCTAATGAAGGTGGCGTTCGTCTAAAGGAAGGGAAAAAACCAGAGGCCCTCTTAAAACGTATTATAGAGCT ATCAACTGAAGAAAATGATATAGTCTTAGACTTCTTCATGGGCACTGGCACAACCTGTGCAGTTGCCCATAAAATGGGAA GACAATACATTGGTGTAGAACAACTTGATTACGGCGAAAATAGTGCAGTTGTGAGATTAAAAAATGTTATAAATGGTGAT CAAACAGGTATTTCTAAAGCTGTAGGCTGGCAAGGTGGCGGCGATTTCATATACATGGGGCTGATGAAAAATAACGAGAT TTATATTGAAAAGATTGAAAATGCCAAAACAACAGAAGAACTTCTAAATATTTGGAAAGATATAAACCACAACGGATTTT TGAGCTATAGGGTTGATTCAAAATTATTTGATGAAAACATTGAAGAGTTTAAGGCTCTTAGTCTGGATGAACAAAAGAAA TTACTACTTGAGATGCTGGAATACAACGACCTTTATGTAAATTACAGCGAAATTGATGATGTTATTTACAATGTGAGTGA AGAAGACAAAAAGCTCAATAAAGACTTTTACGAGGAGAGAAAAGATGCCTGA
Upstream 100 bases:
>100_bases CCTGCTTACAAGGTAGCAGGACAGTGGCGGTTTAAGAAAATGATGATTGAAGAGTGGTTAGAGCAAAATCTGAAATATGA AAAACAGGGAGGGCAATAAA
Downstream 100 bases:
>100_bases TAATCAAAGATTAAACCAGGAATATGATATTCTTTCAAAAATGGGGTATCTTAAAAAGGACATTCCTAAATACATTGAAG ATAATCTCAATCCAAGGTTT
Product: DNA methylase N-4/N-6 domain protein
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 683; Mature: 682
Protein sequence:
>683_residues MTLMEELKELLKEDTRFVDTEGKLLKNKIVEHALKLDKGLIKLLLKNKRIKEHFFKDVDGVLVFDKEKFMKFIDNKEFLP DSYTAFKNKIGLANKEGKYLAKSKEIVLVWPYKDCVLEGGQEKSDEKRKEIFHNVILAPDEIDRLLEPKVFTNFKRIDKD GEHQLDGFRRDDEINRKRGLPEDTITDNLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSDEFQYNDNFRHSTWLTF MKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTASPAGFKVVNPGPIDVTEYILFYARDKKK FNFKLQYVEVEYHENYDRVILNFEDKPENWKLESIKKVVLEENGIPVTGSLRKAYKEAQRRWGKYWKIIFNQLIAEFALR NKERIVSIRDPHKPSESLKQLLIKSKKERDRIFVYGREGADPIFVINGGALAFYKNKVKNIGGREVPTELLTDFWGDISW AGIANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVEQLDYGENSAVVRLKNVINGD QTGISKAVGWQGGGDFIYMGLMKNNEIYIEKIENAKTTEELLNIWKDINHNGFLSYRVDSKLFDENIEEFKALSLDEQKK LLLEMLEYNDLYVNYSEIDDVIYNVSEEDKKLNKDFYEERKDA
Sequences:
>Translated_683_residues MTLMEELKELLKEDTRFVDTEGKLLKNKIVEHALKLDKGLIKLLLKNKRIKEHFFKDVDGVLVFDKEKFMKFIDNKEFLP DSYTAFKNKIGLANKEGKYLAKSKEIVLVWPYKDCVLEGGQEKSDEKRKEIFHNVILAPDEIDRLLEPKVFTNFKRIDKD GEHQLDGFRRDDEINRKRGLPEDTITDNLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSDEFQYNDNFRHSTWLTF MKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTASPAGFKVVNPGPIDVTEYILFYARDKKK FNFKLQYVEVEYHENYDRVILNFEDKPENWKLESIKKVVLEENGIPVTGSLRKAYKEAQRRWGKYWKIIFNQLIAEFALR NKERIVSIRDPHKPSESLKQLLIKSKKERDRIFVYGREGADPIFVINGGALAFYKNKVKNIGGREVPTELLTDFWGDISW AGIANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVEQLDYGENSAVVRLKNVINGD QTGISKAVGWQGGGDFIYMGLMKNNEIYIEKIENAKTTEELLNIWKDINHNGFLSYRVDSKLFDENIEEFKALSLDEQKK LLLEMLEYNDLYVNYSEIDDVIYNVSEEDKKLNKDFYEERKDA >Mature_682_residues TLMEELKELLKEDTRFVDTEGKLLKNKIVEHALKLDKGLIKLLLKNKRIKEHFFKDVDGVLVFDKEKFMKFIDNKEFLPD SYTAFKNKIGLANKEGKYLAKSKEIVLVWPYKDCVLEGGQEKSDEKRKEIFHNVILAPDEIDRLLEPKVFTNFKRIDKDG EHQLDGFRRDDEINRKRGLPEDTITDNLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSDEFQYNDNFRHSTWLTFM KNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTASPAGFKVVNPGPIDVTEYILFYARDKKKF NFKLQYVEVEYHENYDRVILNFEDKPENWKLESIKKVVLEENGIPVTGSLRKAYKEAQRRWGKYWKIIFNQLIAEFALRN KERIVSIRDPHKPSESLKQLLIKSKKERDRIFVYGREGADPIFVINGGALAFYKNKVKNIGGREVPTELLTDFWGDISWA GIANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVEQLDYGENSAVVRLKNVINGDQ TGISKAVGWQGGGDFIYMGLMKNNEIYIEKIENAKTTEELLNIWKDINHNGFLSYRVDSKLFDENIEEFKALSLDEQKKL LLEMLEYNDLYVNYSEIDDVIYNVSEEDKKLNKDFYEERKDA
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 79443; Mature: 79312
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLMEELKELLKEDTRFVDTEGKLLKNKIVEHALKLDKGLIKLLLKNKRIKEHFFKDVDG CCHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC VLVFDKEKFMKFIDNKEFLPDSYTAFKNKIGLANKEGKYLAKSKEIVLVWPYKDCVLEGG EEEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEECCHHHHHCCC QEKSDEKRKEIFHNVILAPDEIDRLLEPKVFTNFKRIDKDGEHQLDGFRRDDEINRKRGL CCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHCCC PEDTITDNLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSDEFQYNDNFRHSTWLTF CCCCCCCCEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHH MKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTASPAGFKVV HHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEHHCCCCCCEEEEEEEEECCCCCEEEE NPGPIDVTEYILFYARDKKKFNFKLQYVEVEYHENYDRVILNFEDKPENWKLESIKKVVL CCCCCCHHHHHEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH EENGIPVTGSLRKAYKEAQRRWGKYWKIIFNQLIAEFALRNKERIVSIRDPHKPSESLKQ HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHH LLIKSKKERDRIFVYGREGADPIFVINGGALAFYKNKVKNIGGREVPTELLTDFWGDISW HHHHCCCCCCEEEEEECCCCCEEEEEECCEEEEEHHHHHCCCCCCCCHHHHHHHHCCCEE AGIANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVE EEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCHHHCCCC QLDYGENSAVVRLKNVINGDQTGISKAVGWQGGGDFIYMGLMKNNEIYIEKIENAKTTEE CCCCCCCCEEEEEEHHCCCCCCCHHHHCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHH LLNIWKDINHNGFLSYRVDSKLFDENIEEFKALSLDEQKKLLLEMLEYNDLYVNYSEIDD HHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEHHHHHH VIYNVSEEDKKLNKDFYEERKDA HHHCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLMEELKELLKEDTRFVDTEGKLLKNKIVEHALKLDKGLIKLLLKNKRIKEHFFKDVDG CHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC VLVFDKEKFMKFIDNKEFLPDSYTAFKNKIGLANKEGKYLAKSKEIVLVWPYKDCVLEGG EEEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEECCHHHHHCCC QEKSDEKRKEIFHNVILAPDEIDRLLEPKVFTNFKRIDKDGEHQLDGFRRDDEINRKRGL CCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHCCC PEDTITDNLIIKGNNLLVLYSLLKEFRGKVKLIYIDPPYNTGSDEFQYNDNFRHSTWLTF CCCCCCCCEEEECCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCHHHHHHH MKNRLEVAKELLKDDGAIFVQLDHHEIGYLNVLMDETFGRGNKVQIIAIKTASPAGFKVV HHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEHHCCCCCCEEEEEEEEECCCCCEEEE NPGPIDVTEYILFYARDKKKFNFKLQYVEVEYHENYDRVILNFEDKPENWKLESIKKVVL CCCCCCHHHHHEEEEECCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHH EENGIPVTGSLRKAYKEAQRRWGKYWKIIFNQLIAEFALRNKERIVSIRDPHKPSESLKQ HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCHHHHHH LLIKSKKERDRIFVYGREGADPIFVINGGALAFYKNKVKNIGGREVPTELLTDFWGDISW HHHHCCCCCCEEEEEECCCCCEEEEEECCEEEEEHHHHHCCCCCCCCHHHHHHHHCCCEE AGIANEGGVRLKEGKKPEALLKRIIELSTEENDIVLDFFMGTGTTCAVAHKMGRQYIGVE EEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCHHHCCCC QLDYGENSAVVRLKNVINGDQTGISKAVGWQGGGDFIYMGLMKNNEIYIEKIENAKTTEE CCCCCCCCEEEEEEHHCCCCCCCHHHHCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHH LLNIWKDINHNGFLSYRVDSKLFDENIEEFKALSLDEQKKLLLEMLEYNDLYVNYSEIDD HHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEHHHHHH VIYNVSEEDKKLNKDFYEERKDA HHHCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]