| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is 239616472
Identifier: 239616472
GI number: 239616472
Start: 73638
End: 76265
Strand: Reverse
Name: 239616472
Synonym: Kole_0061
Alternate gene names: NA
Gene position: 76265-73638 (Counterclockwise)
Preceding gene: 239616473
Following gene: 239616469
Centisome position: 3.31
GC content: 31.66
Gene sequence:
>2628_bases ATGCCTGATAATCAAAGATTAAACCAGGAATATGATATTCTTTCAAAAATGGGGTATCTTAAAAAGGACATTCCTAAATA CATTGAAGATAATCTCAATCCAAGGTTTAAATTAAGACCATACCAGATCGAGGCTATAGCAAGGTTTATACATTATCTTG AAGAAAATCCTAATAGAAAAAGACCAACACAACTTCTCTTTAATATGGCAACCGGTTCTGGTAAAACTCTATTGATGGCT GCAAATATTCTTTATCTTTACAATAAAGGCTATAGAAACTTCTTATTTTTCGTGAACAGCACCAACATAATAGAGAAAAC AAGAGACAACTTTTTAAATCTCCTCTCTCCTAAATATCTTTTTAATCAGAGAATTAAATTTGAGGATAAAGAAGTTGTAA TAAGAGAGGTTTCCAATTTTGATGAAGCAAATGAGGAAGACATAAATATAATCTTCACGACAATACAGGGACTGCATAGC CAGTTAAATCTTTTCAGGGAAAATTCCATTACTTTTGAAGATCTTAAGGATAAGAAAATCGTTTTAATTTCAGATGAAGC CCATCATATCAACGCCTGGACGAGGAATAGATTGAGCAAAACCGAGGAGATGAAAAAAACTTCTTGGGAATATACCGTTA TGCAGATTCTAAACTCAAATCCTGAAAATATATTGCTTGAATATACCGCCACCATTGATTTAGAGAATCCCAGTATTTAC AGCAAATACAAAGATAAGATAATTTTTGAGTATGATCTCAAGCAATTTAGAATTGACGGTTATTCAAAAGAGGTGAAGGT TTTACAGGCAGATCTTGAAAACTGGGAAAGGATGTTGCAGGCGGTTATTTTAAGCCAGTATAGAAGAAAAATAGCGGAGA GAAATGGGATTAGATTAAAACCTGTGATACTTTTTAAATCAAGGAGCATTAAAGAATCCAAAGAGAATTATGAATTATTT AGAGAAAGAATGGACAATATGAGTGAAGCAGACATAGAGGCGATAAAATCAAATTCCACTGGAACTGTATTGGAGAGAGT ATTTAATTATTTTGAAAACGAGGGAATAAATGTAGATAATCTTATAACCGAGTTAAAAGAGGATTTTTCAGAGGAAAAAT GTATTTTGCTTGATTCTGAAAACATAGATAAAGAGAAACAGATTAGACTTAATACCCTTGAGGATGAAAATAATGAGATA AGAGCTATTTTTGCTGTTAAGATGCTTGATGAAGGCTGGGATGTGTTAAATCTCTTTGATATAGTCAGGCTTTATGATAC AAGGGATGGACGGTGGACAAGGGATGGTAGATATATCCCTGGTAATACCACTATTGCAGAGAGGCAGTTGATAGGAAGAG GTGCAAGGTATTATCCATTCAAAATCAATGAAGAGGATGATCTATTTAAGAGAAAATTTGATAACCAACCGGAAAATCCC TTGAAAATCCTTGAAGAGCTTTATTATCACAGCAAATATAATCCCAGATACATACAGGAACTTACTACGGCTCTCAAGGA ATACGGTATTATGCCCTATGAAGAAAAAGAGATTCAATTAAGAGTGAAACCTGATATAAAAAACACTGAGTTTTGGAAAA AAGGATTTTTATTTGTAAATAAAAAGGTTGAGGCTGACAGAAGAGGCATTAAAACTATTGATGATATAGAAATAGAAAGA ACATATAAATACATCCTTCCAACGGGATTTTTGAGAGAAGATATTGTTTTACAAGAAGAAACTACCAGAAGAAATTCTTT TGAAACAACTACACGGACATTTCGTTTAGGTGATTTTGGGGATGTGGTTATAAGAAAAGCCATGGCAAAACTTGATTTTT ATAGATTCAGCAATCTTAAAAGATACTTTCCTGATTTGAATTCTTCAAAGGAATTTATCGAGTCTTTAAAAAAAATAAAT GTTGATATTACCAGTTCTAGAGAGAAGTTAGATGACTTAACACCTGATGATAAATTAAAAGCATGTTTAAATGTGTTGCT ACAACTGGAAAATGAAATTCTGAATGAATATGTTGAGTATAAAGGGACTGAAGTTTTCGTTCCGATTGAGATCAAGGAAG TTGTAAAAGATAAACAGCTTAAAATAAATGTTGGAGACTATGGAGATCAGGAGTATGGGATACCTATGAGTAATGCGAAG CACCCATATTTACAATTGAACCTTGCTAATAAAGATTGGTATATTTATGACGAGAATTATGGAACATACGAAGAAAAATC TTTTGTTAAGTTTATTGATGGTGTCATAAATGAATTGAGACAAAAATATAGTGAAGTATATTTGTTAAGAAATGCAAATC TATTTAAAATTTATAGATTCTCAGATGGTAAAGCTATGGAACCAGATTTTGTCTTGTTTCTAAGAAGGGAAGATTCTAAA GAAATAGAACAGTATCAACTTTTCATAGAGACTAAAGGAGAACATTTGATTAAAACTGATCAATGGAAAGAAGATTTCTT AAAAGAAATTGAAGAAAAATATAGTATCAATCTTAAAGCTACTATATTTGGAGAGAATGAAAAATATAGATTAATTGGGT TGCCATTTTATAATGAAGGCAGGAAAAATGAGTTTATAAATGAGTTTAAGAAAAAACTAGGCTTATAA
Upstream 100 bases:
>100_bases AACGACCTTTATGTAAATTACAGCGAAATTGATGATGTTATTTACAATGTGAGTGAAGAAGACAAAAAGCTCAATAAAGA CTTTTACGAGGAGAGAAAAG
Downstream 100 bases:
>100_bases AATTGAGATAGCGGGCGTGTCACATATTTTGTGTAAACCCCAAACTCCGGAAAAGATCAGACATAGGATTTCACCCAATC AAATTCTATCATCAAAGTGG
Product: Type III site-specific deoxyribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 874
Protein sequence:
>875_residues MPDNQRLNQEYDILSKMGYLKKDIPKYIEDNLNPRFKLRPYQIEAIARFIHYLEENPNRKRPTQLLFNMATGSGKTLLMA ANILYLYNKGYRNFLFFVNSTNIIEKTRDNFLNLLSPKYLFNQRIKFEDKEVVIREVSNFDEANEEDINIIFTTIQGLHS QLNLFRENSITFEDLKDKKIVLISDEAHHINAWTRNRLSKTEEMKKTSWEYTVMQILNSNPENILLEYTATIDLENPSIY SKYKDKIIFEYDLKQFRIDGYSKEVKVLQADLENWERMLQAVILSQYRRKIAERNGIRLKPVILFKSRSIKESKENYELF RERMDNMSEADIEAIKSNSTGTVLERVFNYFENEGINVDNLITELKEDFSEEKCILLDSENIDKEKQIRLNTLEDENNEI RAIFAVKMLDEGWDVLNLFDIVRLYDTRDGRWTRDGRYIPGNTTIAERQLIGRGARYYPFKINEEDDLFKRKFDNQPENP LKILEELYYHSKYNPRYIQELTTALKEYGIMPYEEKEIQLRVKPDIKNTEFWKKGFLFVNKKVEADRRGIKTIDDIEIER TYKYILPTGFLREDIVLQEETTRRNSFETTTRTFRLGDFGDVVIRKAMAKLDFYRFSNLKRYFPDLNSSKEFIESLKKIN VDITSSREKLDDLTPDDKLKACLNVLLQLENEILNEYVEYKGTEVFVPIEIKEVVKDKQLKINVGDYGDQEYGIPMSNAK HPYLQLNLANKDWYIYDENYGTYEEKSFVKFIDGVINELRQKYSEVYLLRNANLFKIYRFSDGKAMEPDFVLFLRREDSK EIEQYQLFIETKGEHLIKTDQWKEDFLKEIEEKYSINLKATIFGENEKYRLIGLPFYNEGRKNEFINEFKKKLGL
Sequences:
>Translated_875_residues MPDNQRLNQEYDILSKMGYLKKDIPKYIEDNLNPRFKLRPYQIEAIARFIHYLEENPNRKRPTQLLFNMATGSGKTLLMA ANILYLYNKGYRNFLFFVNSTNIIEKTRDNFLNLLSPKYLFNQRIKFEDKEVVIREVSNFDEANEEDINIIFTTIQGLHS QLNLFRENSITFEDLKDKKIVLISDEAHHINAWTRNRLSKTEEMKKTSWEYTVMQILNSNPENILLEYTATIDLENPSIY SKYKDKIIFEYDLKQFRIDGYSKEVKVLQADLENWERMLQAVILSQYRRKIAERNGIRLKPVILFKSRSIKESKENYELF RERMDNMSEADIEAIKSNSTGTVLERVFNYFENEGINVDNLITELKEDFSEEKCILLDSENIDKEKQIRLNTLEDENNEI RAIFAVKMLDEGWDVLNLFDIVRLYDTRDGRWTRDGRYIPGNTTIAERQLIGRGARYYPFKINEEDDLFKRKFDNQPENP LKILEELYYHSKYNPRYIQELTTALKEYGIMPYEEKEIQLRVKPDIKNTEFWKKGFLFVNKKVEADRRGIKTIDDIEIER TYKYILPTGFLREDIVLQEETTRRNSFETTTRTFRLGDFGDVVIRKAMAKLDFYRFSNLKRYFPDLNSSKEFIESLKKIN VDITSSREKLDDLTPDDKLKACLNVLLQLENEILNEYVEYKGTEVFVPIEIKEVVKDKQLKINVGDYGDQEYGIPMSNAK HPYLQLNLANKDWYIYDENYGTYEEKSFVKFIDGVINELRQKYSEVYLLRNANLFKIYRFSDGKAMEPDFVLFLRREDSK EIEQYQLFIETKGEHLIKTDQWKEDFLKEIEEKYSINLKATIFGENEKYRLIGLPFYNEGRKNEFINEFKKKLGL >Mature_874_residues PDNQRLNQEYDILSKMGYLKKDIPKYIEDNLNPRFKLRPYQIEAIARFIHYLEENPNRKRPTQLLFNMATGSGKTLLMAA NILYLYNKGYRNFLFFVNSTNIIEKTRDNFLNLLSPKYLFNQRIKFEDKEVVIREVSNFDEANEEDINIIFTTIQGLHSQ LNLFRENSITFEDLKDKKIVLISDEAHHINAWTRNRLSKTEEMKKTSWEYTVMQILNSNPENILLEYTATIDLENPSIYS KYKDKIIFEYDLKQFRIDGYSKEVKVLQADLENWERMLQAVILSQYRRKIAERNGIRLKPVILFKSRSIKESKENYELFR ERMDNMSEADIEAIKSNSTGTVLERVFNYFENEGINVDNLITELKEDFSEEKCILLDSENIDKEKQIRLNTLEDENNEIR AIFAVKMLDEGWDVLNLFDIVRLYDTRDGRWTRDGRYIPGNTTIAERQLIGRGARYYPFKINEEDDLFKRKFDNQPENPL KILEELYYHSKYNPRYIQELTTALKEYGIMPYEEKEIQLRVKPDIKNTEFWKKGFLFVNKKVEADRRGIKTIDDIEIERT YKYILPTGFLREDIVLQEETTRRNSFETTTRTFRLGDFGDVVIRKAMAKLDFYRFSNLKRYFPDLNSSKEFIESLKKINV DITSSREKLDDLTPDDKLKACLNVLLQLENEILNEYVEYKGTEVFVPIEIKEVVKDKQLKINVGDYGDQEYGIPMSNAKH PYLQLNLANKDWYIYDENYGTYEEKSFVKFIDGVINELRQKYSEVYLLRNANLFKIYRFSDGKAMEPDFVLFLRREDSKE IEQYQLFIETKGEHLIKTDQWKEDFLKEIEEKYSINLKATIFGENEKYRLIGLPFYNEGRKNEFINEFKKKLGL
Specific function: Unknown
COG id: COG3421
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.1.21.5 [H]
Molecular weight: Translated: 104410; Mature: 104279
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDNQRLNQEYDILSKMGYLKKDIPKYIEDNLNPRFKLRPYQIEAIARFIHYLEENPNRK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC RPTQLLFNMATGSGKTLLMAANILYLYNKGYRNFLFFVNSTNIIEKTRDNFLNLLSPKYL CCHHHHEEECCCCCCEEEEEHHEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCHHH FNQRIKFEDKEVVIREVSNFDEANEEDINIIFTTIQGLHSQLNLFRENSITFEDLKDKKI HCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHCCCCCEE VLISDEAHHINAWTRNRLSKTEEMKKTSWEYTVMQILNSNPENILLEYTATIDLENPSIY EEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHH SKYKDKIIFEYDLKQFRIDGYSKEVKVLQADLENWERMLQAVILSQYRRKIAERNGIRLK HHHCCCEEEEECCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE PVILFKSRSIKESKENYELFRERMDNMSEADIEAIKSNSTGTVLERVFNYFENEGINVDN EEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH LITELKEDFSEEKCILLDSENIDKEKQIRLNTLEDENNEIRAIFAVKMLDEGWDVLNLFD HHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEEEEEHHCCCCHHHHHH IVRLYDTRDGRWTRDGRYIPGNTTIAERQLIGRGARYYPFKINEEDDLFKRKFDNQPENP HHHHHCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEECCEEECCCHHHHHHHCCCCCCCH LKILEELYYHSKYNPRYIQELTTALKEYGIMPYEEKEIQLRVKPDIKNTEFWKKGFLFVN HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEE KKVEADRRGIKTIDDIEIERTYKYILPTGFLREDIVLQEETTRRNSFETTTRTFRLGDFG CCCCHHHCCCCCCCCCCHHHHHHHHCCCCCHHHCEEECCHHHCCCCCCCHHEEEECCCHH DVVIRKAMAKLDFYRFSNLKRYFPDLNSSKEFIESLKKINVDITSSREKLDDLTPDDKLK HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCCCCHHHH ACLNVLLQLENEILNEYVEYKGTEVFVPIEIKEVVKDKQLKINVGDYGDQEYGIPMSNAK HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCEEEEEECCCCCCCCCCCCCCCC HPYLQLNLANKDWYIYDENYGTYEEKSFVKFIDGVINELRQKYSEVYLLRNANLFKIYRF CCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEE SDGKAMEPDFVLFLRREDSKEIEQYQLFIETKGEHLIKTDQWKEDFLKEIEEKYSINLKA CCCCCCCCCEEEEEECCCCHHHHHEEEEEEECCCEEECCCCHHHHHHHHHHHHHCEEEEE TIFGENEKYRLIGLPFYNEGRKNEFINEFKKKLGL EEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure PDNQRLNQEYDILSKMGYLKKDIPKYIEDNLNPRFKLRPYQIEAIARFIHYLEENPNRK CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC RPTQLLFNMATGSGKTLLMAANILYLYNKGYRNFLFFVNSTNIIEKTRDNFLNLLSPKYL CCHHHHEEECCCCCCEEEEEHHEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCHHH FNQRIKFEDKEVVIREVSNFDEANEEDINIIFTTIQGLHSQLNLFRENSITFEDLKDKKI HCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHCCCCCEE VLISDEAHHINAWTRNRLSKTEEMKKTSWEYTVMQILNSNPENILLEYTATIDLENPSIY EEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCHHH SKYKDKIIFEYDLKQFRIDGYSKEVKVLQADLENWERMLQAVILSQYRRKIAERNGIRLK HHHCCCEEEEECCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE PVILFKSRSIKESKENYELFRERMDNMSEADIEAIKSNSTGTVLERVFNYFENEGINVDN EEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHH LITELKEDFSEEKCILLDSENIDKEKQIRLNTLEDENNEIRAIFAVKMLDEGWDVLNLFD HHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEEEEEHHCCCCHHHHHH IVRLYDTRDGRWTRDGRYIPGNTTIAERQLIGRGARYYPFKINEEDDLFKRKFDNQPENP HHHHHCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEECCEEECCCHHHHHHHCCCCCCCH LKILEELYYHSKYNPRYIQELTTALKEYGIMPYEEKEIQLRVKPDIKNTEFWKKGFLFVN HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEE KKVEADRRGIKTIDDIEIERTYKYILPTGFLREDIVLQEETTRRNSFETTTRTFRLGDFG CCCCHHHCCCCCCCCCCHHHHHHHHCCCCCHHHCEEECCHHHCCCCCCCHHEEEECCCHH DVVIRKAMAKLDFYRFSNLKRYFPDLNSSKEFIESLKKINVDITSSREKLDDLTPDDKLK HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCCCCHHHH ACLNVLLQLENEILNEYVEYKGTEVFVPIEIKEVVKDKQLKINVGDYGDQEYGIPMSNAK HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCEEEEEECCCCCCCCCCCCCCCC HPYLQLNLANKDWYIYDENYGTYEEKSFVKFIDGVINELRQKYSEVYLLRNANLFKIYRF CCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEE SDGKAMEPDFVLFLRREDSKEIEQYQLFIETKGEHLIKTDQWKEDFLKEIEEKYSINLKA CCCCCCCCCEEEEEECCCCHHHHHEEEEEEECCCEEECCCCHHHHHHHHHHHHHCEEEEE TIFGENEKYRLIGLPFYNEGRKNEFINEFKKKLGL EEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]