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The map label for this gene is yokA [H]

Identifier: 238925871

GI number: 238925871

Start: 3300604

End: 3302295

Strand: Reverse

Name: yokA [H]

Synonym: EUBREC_3529

Alternate gene names: 238925871

Gene position: 3302295-3300604 (Counterclockwise)

Preceding gene: 238925872

Following gene: 238925870

Centisome position: 95.73

GC content: 40.31

Gene sequence:

>1692_bases
ATGTATCAGAATATCAACAAAATCTATCATGCCGCCATCTATGTCAGATTATCTAAAGAAGATGGCGATATTTCCAGTTC
AGCAAAACTGGAAAGTAACAGCATTTCTAACCAGAAAGCTTTGATTCTGGATTTCCTGAAAGACAAAAAAGATATTGAAG
TTGTTTCAGTCCGAGTTGATGATGGCTACTCAGGCTCTAATTTTGAGCGCCCTGCATTCCAGGCAATGCTGGAAGATATC
CGGCATGGGATTGTAGACTGCGTAGTGGTAAAAGATTTATCACGATTTGGAAGGGAATATATTGATTCCGGGAAGTATAT
CGAGAGATTATTCCCGGCTCTTGGTGTGCGTTTTATTGCCATCAATGATAATTATGACAGTCTTAAGGGAAAGAATCAGG
CAGACGAAATCATTATCCCATTTAAAAATTTAATCAACGATGCTTATTGTCGTGATATTTCTATTAAGATCAGGAGTAAT
CTTGAGATTAAGAGGAAAAAAGGCGAGTGCGTGACTCCGTTTGTAGCATTTGGATACAGGAAGACAAAGACAGATAAGCA
TAAATTAGAGATTGATCCATCGGCGGGCGGTGTAGTACAGGATATTTTTAAGATGAAGCTGCAGGGAATGAGTCAGGATG
CGATCGCTAATCGTTTAAATGAACTGGGTATTCTTTCCCCATTTGAGTATAAAATAAGCAGCGGCAGTCGTTATGAAACA
GGTTTCCGGCAGAAAGAACAGGCACTTTGGAGTTCCGTTACGGTCCGCAGGATACTGGAAAACGAGGTTTATATCGGAAA
CCTTGTACAGGGAAAAAGGACAACTCCAAACCATAAAGTGAAGCAGACTTATGTGAAACCGGAAGATGACTGGATCCGGA
TTGAGAAAAATCATGAACCTCTGGTGAGTGACCGTGATTTTGAAATTGTTCAGAGGCTTCTTGGCATGGATACACGTACT
TCACCTGACCAAAAGCAGGTATATCTGTTATCCGGAATTGCTGTATGTGCGGATTGTGGAGCACCTATGACAAGAAAGGT
TTCTACTGTGGCAGGAAAAAAATATGCTTATTATCTATGTTCCACAAATAAAGAAACAAAACGCTGTTCCAGTCATAGAA
TACCGGAAAAGGATCTGGAAGATGCCGTATTAGTGATGTTGAAACAGCATATCCAGAATATCCTGCACCTGAAAAGAGTC
CTGGAATTTATCGGTACTGTGCCATTTCAGGGGATCAATATGAAAAAGCGGCAGGACAGGCTGGAGAAGAAAAAGCAGGA
GAAAGAACGCTGTAAGGAGTTACGGATGATGCTCTATTCGGATATGAAAGAGGGCATTGTATCAAAAGAAGACTATGTAG
AGCTTCATGCAGCATATGGAAAGCGGCTTAGAAATGCGGAAGAGAGTATCCGTGCGATCCAGAAAGAAATGGATAACGAG
CTGGAAAAAGCAGACAAAGCCAATACCTGGCTGGATTATTTTGTGAAATATCAGGATATTGAAGAACTGTCCCGCACTGT
GGTGGTAGAACTGATCAGGCAAATCAGAGTATATGATAAAAAGAATATAGAGATCACTTTTGATTTTGATGATTGTTATC
AGACATTGCTGAATCAATTACCTGCTATGGGAGTTGATATGGTAATAGATGATGATAACAATCTGCAGGTCAATGTAAAG
GAGGTTGTATAA

Upstream 100 bases:

>100_bases
TGGTAAAATTGAGGGGACTGTGTTAGAATGTCGGTAAGGACAAATTATGCAGCCCCCTTTTATTACATGGATTTTCTGAC
GTAATAAAAGGAGGTAAGAT

Downstream 100 bases:

>100_bases
AATGGCACGAAAGAGCAGGAAAAACATTCCGGAAGTAGTCAGCAGTGCAACCGTCCAGACAGAGGTGAGCAGACCGTTCC
GGGCAGGATTGTATGCCAGA

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVDDGYSGSNFERPAFQAMLEDI
RHGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIAINDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSN
LEIKRKKGECVTPFVAFGYRKTKTDKHKLEIDPSAGGVVQDIFKMKLQGMSQDAIANRLNELGILSPFEYKISSGSRYET
GFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEPLVSDRDFEIVQRLLGMDTRT
SPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLCSTNKETKRCSSHRIPEKDLEDAVLVMLKQHIQNILHLKRV
LEFIGTVPFQGINMKKRQDRLEKKKQEKERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDNE
LEKADKANTWLDYFVKYQDIEELSRTVVVELIRQIRVYDKKNIEITFDFDDCYQTLLNQLPAMGVDMVIDDDNNLQVNVK
EVV

Sequences:

>Translated_563_residues
MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVDDGYSGSNFERPAFQAMLEDI
RHGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIAINDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSN
LEIKRKKGECVTPFVAFGYRKTKTDKHKLEIDPSAGGVVQDIFKMKLQGMSQDAIANRLNELGILSPFEYKISSGSRYET
GFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEPLVSDRDFEIVQRLLGMDTRT
SPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLCSTNKETKRCSSHRIPEKDLEDAVLVMLKQHIQNILHLKRV
LEFIGTVPFQGINMKKRQDRLEKKKQEKERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDNE
LEKADKANTWLDYFVKYQDIEELSRTVVVELIRQIRVYDKKNIEITFDFDDCYQTLLNQLPAMGVDMVIDDDNNLQVNVK
EVV
>Mature_563_residues
MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVDDGYSGSNFERPAFQAMLEDI
RHGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIAINDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSN
LEIKRKKGECVTPFVAFGYRKTKTDKHKLEIDPSAGGVVQDIFKMKLQGMSQDAIANRLNELGILSPFEYKISSGSRYET
GFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEPLVSDRDFEIVQRLLGMDTRT
SPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLCSTNKETKRCSSHRIPEKDLEDAVLVMLKQHIQNILHLKRV
LEFIGTVPFQGINMKKRQDRLEKKKQEKERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDNE
LEKADKANTWLDYFVKYQDIEELSRTVVVELIRQIRVYDKKNIEITFDFDDCYQTLLNQLPAMGVDMVIDDDNNLQVNVK
EVV

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 65031; Mature: 65031

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVD
CCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEC
DGYSGSNFERPAFQAMLEDIRHGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEE
INDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSNLEIKRKKGECVTPFVAFGYR
EECCHHHCCCCCCCCCEEECHHHHCCHHHHCEEEEEEECCCEEEECCCCCCCHHHHHCCC
KTKTDKHKLEIDPSAGGVVQDIFKMKLQGMSQDAIANRLNELGILSPFEYKISSGSRYET
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCC
GFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEP
CHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC
LVSDRDFEIVQRLLGMDTRTSPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLC
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCEEEEEEE
STNKETKRCSSHRIPEKDLEDAVLVMLKQHIQNILHLKRVLEFIGTVPFQGINMKKRQDR
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LEKKKQEKERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDNE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEKADKANTWLDYFVKYQDIEELSRTVVVELIRQIRVYDKKNIEITFDFDDCYQTLLNQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHC
PAMGVDMVIDDDNNLQVNVKEVV
CCCCCEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVD
CCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEC
DGYSGSNFERPAFQAMLEDIRHGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEEEE
INDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSNLEIKRKKGECVTPFVAFGYR
EECCHHHCCCCCCCCCEEECHHHHCCHHHHCEEEEEEECCCEEEECCCCCCCHHHHHCCC
KTKTDKHKLEIDPSAGGVVQDIFKMKLQGMSQDAIANRLNELGILSPFEYKISSGSRYET
CCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCC
GFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEP
CHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCC
LVSDRDFEIVQRLLGMDTRTSPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLC
CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCEEEEEEE
STNKETKRCSSHRIPEKDLEDAVLVMLKQHIQNILHLKRVLEFIGTVPFQGINMKKRQDR
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LEKKKQEKERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDNE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEKADKANTWLDYFVKYQDIEELSRTVVVELIRQIRVYDKKNIEITFDFDDCYQTLLNQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHC
PAMGVDMVIDDDNNLQVNVKEVV
CCCCCEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]