| Definition | Eubacterium rectale ATCC 33656, complete genome. |
|---|---|
| Accession | NC_012781 |
| Length | 3,449,685 |
Click here to switch to the map view.
The map label for this gene is agaR [H]
Identifier: 238925730
GI number: 238925730
Start: 3198912
End: 3201098
Strand: Reverse
Name: agaR [H]
Synonym: EUBREC_3387
Alternate gene names: 238925730
Gene position: 3201098-3198912 (Counterclockwise)
Preceding gene: 238925731
Following gene: 238925727
Centisome position: 92.79
GC content: 40.42
Gene sequence:
>2187_bases ATGTCTGTTATATATAATGAAACAAGAAGAATCTTTAAGCTGGATACAGAAAATACATCATACTTGATCGGTATTTCACC GGAAGGATATGTTGGGCATGTATATTATGGAGAATATTTAGAGGATGCAGATGCGTACTATTTGTTAAGAACAGAAGAAC CTCCGTTTACACCATCTGTAAATGAACGTGAAAAATCTTCATTTTTAGATTTCTTTCCGACAGAATATCCGTCCGGAGGA GTGGGAGATTATAGAGAAAGCTGCATTAATGTCAGAAATGAAGCAGGATGTATGGGAAGTGAGTTCTTCTACGATTCTTA TGAAATTAAGACGGGGAAACCATCATTGGATGGGCTTCCGGCATCTTTTGGAGGAGCAGAGGACGTCACTACACTTGAGA TTACCTGTGTTGATCCGGTCTTAAATCTGAAATTAATACTTTCCTATTCAGCATTTGAAAAGGAAGATGTAATAACAAGA AGCGTGAAAATAGTAAATACAGGAAAACAGCAGGTAAGACTTGAGAAAGTTTACAGTGCATGTCTGGATATGGATAATGA GAATTTTGAACTGCTCACACTTCATGGCTCCTGGGGCAGAGAGCGTCATATCCAGCGTCGGGTAATTTGTTATGGAAAGC AGCTTGTATCATCTGCAAAAGGAAAACCCGGACATCAGGAACATCCATTTATAGCACTTGTGACGCCGGGAACAAACCAG CAGCAGGGAAGAGTGTATGGAATGCATTTCGTATACTCTGGTAACTTCATCGGACAGGCAGAACTGACACAGTTTGATAC TGTCCGTATGGTAATGGGAATCCATCAGGAAGAATTCTGCTGGAATTTACGAGGTGGTGAATCATTTCAGGCTCCGGAGG TTGTGCTGACATTTTCGGAAGAAGGACTTGGGAAGATGACAAGATCTCTTCATGATTTCTATCGTCAGCATATGATCAGA AGTAAATACAAAGATCAGAAGCGTCCGATTTTGATCAATAACTGGGAAGCAACGTACTTTGATTTTAATACAGAGAAACT TCTGGATATTGCAAGAGAAGCGAAAAAAGACGGCATTGAGATGCTTGTTATGGATGATGGCTGGTTTGGTAAGAGAAATT CGGATAACTGTTCACTTGGAGACTGGTTTGTAAATGAAGATAAGATTAATGGCGGACTTAAGCATCTTGTAGAAGAAGTG AAGAAAATAGGACTGAAATTTGGCATCTGGTTTGAGCCGGAGATGATTTCACCGGATTCTGAACTTTATAAAGTACATCC GGAGTGGGCAATTCATATTGAGGGACGTAAAGCAACACAGATCCGTCAGCAATATGTACTTGATCTTTCTAATCCGGAGG TTATAGATTATGCATATGAATCTGTGGCAAAGATTTTAAGAAGTGTGTCGATTGACTATGTGAAATGGGATATGAACCGG GAGTTAAGTGATCTTGGCAGCAGTTATCTTGACAAAGATTCGCAGCAGGAATTATTCCATCGTTATGTGCTTGGTCTATA TAAAATGCAGGAACGTTTGATTACGGAATTCCCTGATTTGTTACTGGAAAACTGCTCCGGAGGCGGTGCAAGATTTGACC CGGGAATGTTATATTATAGTCCACAGATCTGGTGCTCAGATGATACGGATGCAGTAGAGCGTCTGGAGATTCAAGAGGGA ACTGCACTTATCTATCCGCTGTCTACAATGGGAGCGCATGTTAGTGTGTGTCCGAATCATTCCGTAGGACGAATAACACC ATTCGAAACAAGAGGACATGTTGCACTTGCAGGAACATTCGGTTATGAACTGGATATTACAAAGCTTCCGGAAGAGGAGC GTAAAATGATCAAAGAACAGACAGAAATGTATCATAAGTACAATGACCTTGTAAGAGAGGGGGATTATTACAGAATCGCT TCCTTCTCTGAAAATGGTCATTATGATTGCTACATGGAAGTCGCGAAGGATAAATCTGAAGCACTTGTAACTTATGTCCA GGTACGCGGTATGACGAATAATAAGAGTAGAAAGTTAAAGCTGCAGGGATTAGATCCAAAAGCAATCTATCAATTAGAAG GAACAGAAGAGAGCTATTCAGGAGAAATTCTGATGAAAGGCGGATATCTGTTTAAAGACTTCTGGGGAGATGCGGTCAGC AGACTGTACCATTTTATGAAAAAATAA
Upstream 100 bases:
>100_bases ATATCATTTACAGTGCGTGATTACAAAGCTGATATAAGAAAAGATGCGGCAGAGAAACTGAAAGAGCTTGAGAAAGCTAT GACAAAAGGGAGGGCATAAA
Downstream 100 bases:
>100_bases TAAGTAGTAAAAGAAAGCTGTGAGATAGTAAGAAGTTTTTATTTTTTCACAGCTTTTTTGTAGAAAGGAGACTATGAAGA AAAGTCTGTAAATTAGATTC
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 728; Mature: 727
Protein sequence:
>728_residues MSVIYNETRRIFKLDTENTSYLIGISPEGYVGHVYYGEYLEDADAYYLLRTEEPPFTPSVNEREKSSFLDFFPTEYPSGG VGDYRESCINVRNEAGCMGSEFFYDSYEIKTGKPSLDGLPASFGGAEDVTTLEITCVDPVLNLKLILSYSAFEKEDVITR SVKIVNTGKQQVRLEKVYSACLDMDNENFELLTLHGSWGRERHIQRRVICYGKQLVSSAKGKPGHQEHPFIALVTPGTNQ QQGRVYGMHFVYSGNFIGQAELTQFDTVRMVMGIHQEEFCWNLRGGESFQAPEVVLTFSEEGLGKMTRSLHDFYRQHMIR SKYKDQKRPILINNWEATYFDFNTEKLLDIAREAKKDGIEMLVMDDGWFGKRNSDNCSLGDWFVNEDKINGGLKHLVEEV KKIGLKFGIWFEPEMISPDSELYKVHPEWAIHIEGRKATQIRQQYVLDLSNPEVIDYAYESVAKILRSVSIDYVKWDMNR ELSDLGSSYLDKDSQQELFHRYVLGLYKMQERLITEFPDLLLENCSGGGARFDPGMLYYSPQIWCSDDTDAVERLEIQEG TALIYPLSTMGAHVSVCPNHSVGRITPFETRGHVALAGTFGYELDITKLPEEERKMIKEQTEMYHKYNDLVREGDYYRIA SFSENGHYDCYMEVAKDKSEALVTYVQVRGMTNNKSRKLKLQGLDPKAIYQLEGTEESYSGEILMKGGYLFKDFWGDAVS RLYHFMKK
Sequences:
>Translated_728_residues MSVIYNETRRIFKLDTENTSYLIGISPEGYVGHVYYGEYLEDADAYYLLRTEEPPFTPSVNEREKSSFLDFFPTEYPSGG VGDYRESCINVRNEAGCMGSEFFYDSYEIKTGKPSLDGLPASFGGAEDVTTLEITCVDPVLNLKLILSYSAFEKEDVITR SVKIVNTGKQQVRLEKVYSACLDMDNENFELLTLHGSWGRERHIQRRVICYGKQLVSSAKGKPGHQEHPFIALVTPGTNQ QQGRVYGMHFVYSGNFIGQAELTQFDTVRMVMGIHQEEFCWNLRGGESFQAPEVVLTFSEEGLGKMTRSLHDFYRQHMIR SKYKDQKRPILINNWEATYFDFNTEKLLDIAREAKKDGIEMLVMDDGWFGKRNSDNCSLGDWFVNEDKINGGLKHLVEEV KKIGLKFGIWFEPEMISPDSELYKVHPEWAIHIEGRKATQIRQQYVLDLSNPEVIDYAYESVAKILRSVSIDYVKWDMNR ELSDLGSSYLDKDSQQELFHRYVLGLYKMQERLITEFPDLLLENCSGGGARFDPGMLYYSPQIWCSDDTDAVERLEIQEG TALIYPLSTMGAHVSVCPNHSVGRITPFETRGHVALAGTFGYELDITKLPEEERKMIKEQTEMYHKYNDLVREGDYYRIA SFSENGHYDCYMEVAKDKSEALVTYVQVRGMTNNKSRKLKLQGLDPKAIYQLEGTEESYSGEILMKGGYLFKDFWGDAVS RLYHFMKK >Mature_727_residues SVIYNETRRIFKLDTENTSYLIGISPEGYVGHVYYGEYLEDADAYYLLRTEEPPFTPSVNEREKSSFLDFFPTEYPSGGV GDYRESCINVRNEAGCMGSEFFYDSYEIKTGKPSLDGLPASFGGAEDVTTLEITCVDPVLNLKLILSYSAFEKEDVITRS VKIVNTGKQQVRLEKVYSACLDMDNENFELLTLHGSWGRERHIQRRVICYGKQLVSSAKGKPGHQEHPFIALVTPGTNQQ QGRVYGMHFVYSGNFIGQAELTQFDTVRMVMGIHQEEFCWNLRGGESFQAPEVVLTFSEEGLGKMTRSLHDFYRQHMIRS KYKDQKRPILINNWEATYFDFNTEKLLDIAREAKKDGIEMLVMDDGWFGKRNSDNCSLGDWFVNEDKINGGLKHLVEEVK KIGLKFGIWFEPEMISPDSELYKVHPEWAIHIEGRKATQIRQQYVLDLSNPEVIDYAYESVAKILRSVSIDYVKWDMNRE LSDLGSSYLDKDSQQELFHRYVLGLYKMQERLITEFPDLLLENCSGGGARFDPGMLYYSPQIWCSDDTDAVERLEIQEGT ALIYPLSTMGAHVSVCPNHSVGRITPFETRGHVALAGTFGYELDITKLPEEERKMIKEQTEMYHKYNDLVREGDYYRIAS FSENGHYDCYMEVAKDKSEALVTYVQVRGMTNNKSRKLKLQGLDPKAIYQLEGTEESYSGEILMKGGYLFKDFWGDAVSR LYHFMKK
Specific function: Alpha-galactosidase associated with the raffinose operon [H]
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 83697; Mature: 83565
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIYNETRRIFKLDTENTSYLIGISPEGYVGHVYYGEYLEDADAYYLLRTEEPPFTPSV CCEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHCCCCEEEEEEECCCCCCCCC NEREKSSFLDFFPTEYPSGGVGDYRESCINVRNEAGCMGSEFFYDSYEIKTGKPSLDGLP CCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEECCEEEECCCCCCCCCC ASFGGAEDVTTLEITCVDPVLNLKLILSYSAFEKEDVITRSVKIVNTGKQQVRLEKVYSA CCCCCCCCCEEEEEEEECCHHCEEEEEEECCCCCHHHHHHEEEEEECCHHHHHHHHHHHH CLDMDNENFELLTLHGSWGRERHIQRRVICYGKQLVSSAKGKPGHQEHPFIALVTPGTNQ HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC QQGRVYGMHFVYSGNFIGQAELTQFDTVRMVMGIHQEEFCWNLRGGESFQAPEVVLTFSE CCCEEEEEEEEEECCEECCCHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEEECC EGLGKMTRSLHDFYRQHMIRSKYKDQKRPILINNWEATYFDFNTEKLLDIAREAKKDGIE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCHHHHHHHHHHHHCCCCE MLVMDDGWFGKRNSDNCSLGDWFVNEDKINGGLKHLVEEVKKIGLKFGIWFEPEMISPDS EEEEECCCCCCCCCCCCCCCCEECCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC ELYKVHPEWAIHIEGRKATQIRQQYVLDLSNPEVIDYAYESVAKILRSVSIDYVKWDMNR CEEEECCCEEEEECCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC ELSDLGSSYLDKDSQQELFHRYVLGLYKMQERLITEFPDLLLENCSGGGARFDPGMLYYS CHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC PQIWCSDDTDAVERLEIQEGTALIYPLSTMGAHVSVCPNHSVGRITPFETRGHVALAGTF CEEEECCCCHHHHHEEECCCCEEEEEHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEEC GYELDITKLPEEERKMIKEQTEMYHKYNDLVREGDYYRIASFSENGHYDCYMEVAKDKSE CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHH ALVTYVQVRGMTNNKSRKLKLQGLDPKAIYQLEGTEESYSGEILMKGGYLFKDFWGDAVS HEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCEEHHHHHHHHHH RLYHFMKK HHHHHHCC >Mature Secondary Structure SVIYNETRRIFKLDTENTSYLIGISPEGYVGHVYYGEYLEDADAYYLLRTEEPPFTPSV CEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHCCCCEEEEEEECCCCCCCCC NEREKSSFLDFFPTEYPSGGVGDYRESCINVRNEAGCMGSEFFYDSYEIKTGKPSLDGLP CCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEECCEEEECCCCCCCCCC ASFGGAEDVTTLEITCVDPVLNLKLILSYSAFEKEDVITRSVKIVNTGKQQVRLEKVYSA CCCCCCCCCEEEEEEEECCHHCEEEEEEECCCCCHHHHHHEEEEEECCHHHHHHHHHHHH CLDMDNENFELLTLHGSWGRERHIQRRVICYGKQLVSSAKGKPGHQEHPFIALVTPGTNQ HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC QQGRVYGMHFVYSGNFIGQAELTQFDTVRMVMGIHQEEFCWNLRGGESFQAPEVVLTFSE CCCEEEEEEEEEECCEECCCHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEEECC EGLGKMTRSLHDFYRQHMIRSKYKDQKRPILINNWEATYFDFNTEKLLDIAREAKKDGIE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCHHHHHHHHHHHHCCCCE MLVMDDGWFGKRNSDNCSLGDWFVNEDKINGGLKHLVEEVKKIGLKFGIWFEPEMISPDS EEEEECCCCCCCCCCCCCCCCEECCHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC ELYKVHPEWAIHIEGRKATQIRQQYVLDLSNPEVIDYAYESVAKILRSVSIDYVKWDMNR CEEEECCCEEEEECCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC ELSDLGSSYLDKDSQQELFHRYVLGLYKMQERLITEFPDLLLENCSGGGARFDPGMLYYS CHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC PQIWCSDDTDAVERLEIQEGTALIYPLSTMGAHVSVCPNHSVGRITPFETRGHVALAGTF CEEEECCCCHHHHHEEECCCCEEEEEHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEEC GYELDITKLPEEERKMIKEQTEMYHKYNDLVREGDYYRIASFSENGHYDCYMEVAKDKSE CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHH ALVTYVQVRGMTNNKSRKLKLQGLDPKAIYQLEGTEESYSGEILMKGGYLFKDFWGDAVS HEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCEEHHHHHHHHHH RLYHFMKK HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA