Click here to switch to the map view.

The map label for this gene is 238925565

Identifier: 238925565

GI number: 238925565

Start: 3063614

End: 3065152

Strand: Direct

Name: 238925565

Synonym: EUBREC_3221

Alternate gene names: NA

Gene position: 3063614-3065152 (Clockwise)

Preceding gene: 238925564

Following gene: 238925566

Centisome position: 88.81

GC content: 44.77

Gene sequence:

>1539_bases
ATGACCAAATACCGAGAAATCATCCGGCTTACCGGATTGGGCTTCTCTCAGCGTAACATCATGGCAAGCTGTGGTGTTGC
TCAGAAAACTGTAGTCAAAGTTCAAAAACGTGCCAGAGAATTAAATATTTCTTGGCCACTTGATGAATCTATGACGGATA
CTGAACTTCAAAGACTAATGTTTTCTAAAGAAAGTTCAGTATCGCAAAACAAGCGTATGCCAGACTACGACTACATCCAC
AAGGAGCTGCTCCGTAACGGAGTCAGTAAAAAGCTCCTGTGGACTGAATACATGGAGGACTGCCGTGCCAACGGCGATGA
ACCGCTCATGTATTCTCAATTCTGCCATCATATCCAGCAGGATGAGCAGAAACGACGTGCTACCATGCACATCAATCGCA
AACCCGGTGAGCAGATTGAAGTTGACTGGGCAGGGGATCCTGCAACAATCATCGACCCGGATACCAGTGAAATCTTAAAG
GCTTACATATTCGTAGGTGTAATGACTTACAGCCAGTATGCGTATGTAGAAGCCTTTCTGGATATGAAGCAGAAATCATG
GATCACTGCTCATGTCCATATGTACGAGTTCTTTGGCGGTGTTGCCAGAATCCTTGTTCCGGATAACTGCAAGACAGCGG
TTGTTCACAATGGTGGTTGGAAAGACAAGCAGATCAATGAAACTTATCAGGAAATGGCTGAGCACTATGGCACAGCTATC
ATCCCTGCCCGTGTCAGGACACCAAAGGATAAGCCGAATGCTGAAGGAACAGTAGGAAATATTTCTACCTGGATAACAGC
AGCACTCCGAAATGAACAGTTCTTTTCTCTTGCCGAATTAAACCATGCAATCAGAGAAAAACTGGAACGATTCAATCGAA
TACTCTTTCAAAAGAAAGAGGGCAGCCGGTTGGACTTATTCCTTGAAGATGAAAAGCCGTTACTTTCGCCATTACCTGCT
ACCCGCTTTGAACTGAGTGACTGGAAGACAGCCACTGTCCAGTTCAATTATCACATATCTGTGGATGGAATGCTATACTC
AGTTCCATATGAATACATCAAAAAGAAAGTTGATGTAACGGTAACAGATACCACCATTGAAATTTTTTACAATCATAACC
GCATTGCTTCCCACCGCCGTCTGAAAGGACGCCCCGGGCAGTACAGCACCATTACGGAACATATGCCGGAAGATCACCAG
AAGTATCTGGAGTGGAATGGCGACCGCTTCCGCAAATGGGCTGAGCGGATTGGCATAAATACGTACACTGTGGTCAATGC
AATACTGACCTCCAAACGTGTGGAACAACAAACTTATCGGAGCTGCATGGGACTTTTAAAGCTTACTGATAAATACTCAG
AAGCTTCGCTTGAAGCCGCTTGTAAAAAAGCATTATCCTATACAGCTTCGCCCAGTTACAAGAGTATCAAAAACATCCTT
GTAACTGGTTCTGTAAAAACGGAGCCAGAATCATCTGGATCCAAGACCACACATAAAGCACACGGCATCACAAGAGGTGC
CGACTACTATCGGAGGTAA

Upstream 100 bases:

>100_bases
AAATCGCGATTCCGTTAAAAAGGAAATCATTTTGTTCCCAAATCCTTATAATGAAGATATGCACCCTATGGTGTAAATTC
ATTACAAGGAGGTCACTATT

Downstream 100 bases:

>100_bases
TCACATATGACAAATCAGAGTACAATAGATAAACTTATTGAAATGCGCCTTACCACAATGGCAGATGCATTCCGTAACCA
GCTTGACGATCCGAAATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MTKYREIIRLTGLGFSQRNIMASCGVAQKTVVKVQKRARELNISWPLDESMTDTELQRLMFSKESSVSQNKRMPDYDYIH
KELLRNGVSKKLLWTEYMEDCRANGDEPLMYSQFCHHIQQDEQKRRATMHINRKPGEQIEVDWAGDPATIIDPDTSEILK
AYIFVGVMTYSQYAYVEAFLDMKQKSWITAHVHMYEFFGGVARILVPDNCKTAVVHNGGWKDKQINETYQEMAEHYGTAI
IPARVRTPKDKPNAEGTVGNISTWITAALRNEQFFSLAELNHAIREKLERFNRILFQKKEGSRLDLFLEDEKPLLSPLPA
TRFELSDWKTATVQFNYHISVDGMLYSVPYEYIKKKVDVTVTDTTIEIFYNHNRIASHRRLKGRPGQYSTITEHMPEDHQ
KYLEWNGDRFRKWAERIGINTYTVVNAILTSKRVEQQTYRSCMGLLKLTDKYSEASLEAACKKALSYTASPSYKSIKNIL
VTGSVKTEPESSGSKTTHKAHGITRGADYYRR

Sequences:

>Translated_512_residues
MTKYREIIRLTGLGFSQRNIMASCGVAQKTVVKVQKRARELNISWPLDESMTDTELQRLMFSKESSVSQNKRMPDYDYIH
KELLRNGVSKKLLWTEYMEDCRANGDEPLMYSQFCHHIQQDEQKRRATMHINRKPGEQIEVDWAGDPATIIDPDTSEILK
AYIFVGVMTYSQYAYVEAFLDMKQKSWITAHVHMYEFFGGVARILVPDNCKTAVVHNGGWKDKQINETYQEMAEHYGTAI
IPARVRTPKDKPNAEGTVGNISTWITAALRNEQFFSLAELNHAIREKLERFNRILFQKKEGSRLDLFLEDEKPLLSPLPA
TRFELSDWKTATVQFNYHISVDGMLYSVPYEYIKKKVDVTVTDTTIEIFYNHNRIASHRRLKGRPGQYSTITEHMPEDHQ
KYLEWNGDRFRKWAERIGINTYTVVNAILTSKRVEQQTYRSCMGLLKLTDKYSEASLEAACKKALSYTASPSYKSIKNIL
VTGSVKTEPESSGSKTTHKAHGITRGADYYRR
>Mature_511_residues
TKYREIIRLTGLGFSQRNIMASCGVAQKTVVKVQKRARELNISWPLDESMTDTELQRLMFSKESSVSQNKRMPDYDYIHK
ELLRNGVSKKLLWTEYMEDCRANGDEPLMYSQFCHHIQQDEQKRRATMHINRKPGEQIEVDWAGDPATIIDPDTSEILKA
YIFVGVMTYSQYAYVEAFLDMKQKSWITAHVHMYEFFGGVARILVPDNCKTAVVHNGGWKDKQINETYQEMAEHYGTAII
PARVRTPKDKPNAEGTVGNISTWITAALRNEQFFSLAELNHAIREKLERFNRILFQKKEGSRLDLFLEDEKPLLSPLPAT
RFELSDWKTATVQFNYHISVDGMLYSVPYEYIKKKVDVTVTDTTIEIFYNHNRIASHRRLKGRPGQYSTITEHMPEDHQK
YLEWNGDRFRKWAERIGINTYTVVNAILTSKRVEQQTYRSCMGLLKLTDKYSEASLEAACKKALSYTASPSYKSIKNILV
TGSVKTEPESSGSKTTHKAHGITRGADYYRR

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR013249
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 59188; Mature: 59057

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKYREIIRLTGLGFSQRNIMASCGVAQKTVVKVQKRARELNISWPLDESMTDTELQRLM
CCHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
FSKESSVSQNKRMPDYDYIHKELLRNGVSKKLLWTEYMEDCRANGDEPLMYSQFCHHIQQ
HHCCCCHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DEQKRRATMHINRKPGEQIEVDWAGDPATIIDPDTSEILKAYIFVGVMTYSQYAYVEAFL
HHHHHHHEEEECCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DMKQKSWITAHVHMYEFFGGVARILVPDNCKTAVVHNGGWKDKQINETYQEMAEHYGTAI
HHHHCCEEEEHHHHHHHHCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEE
IPARVRTPKDKPNAEGTVGNISTWITAALRNEQFFSLAELNHAIREKLERFNRILFQKKE
EECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
GSRLDLFLEDEKPLLSPLPATRFELSDWKTATVQFNYHISVDGMLYSVPYEYIKKKVDVT
CCEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEEEEEEEECCEEEECCHHHHHCCCCEE
VTDTTIEIFYNHNRIASHRRLKGRPGQYSTITEHMPEDHQKYLEWNGDRFRKWAERIGIN
EEEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCC
TYTVVNAILTSKRVEQQTYRSCMGLLKLTDKYSEASLEAACKKALSYTASPSYKSIKNIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEE
VTGSVKTEPESSGSKTTHKAHGITRGADYYRR
EECCCCCCCCCCCCCCCHHHCCCCCCHHHHCC
>Mature Secondary Structure 
TKYREIIRLTGLGFSQRNIMASCGVAQKTVVKVQKRARELNISWPLDESMTDTELQRLM
CHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
FSKESSVSQNKRMPDYDYIHKELLRNGVSKKLLWTEYMEDCRANGDEPLMYSQFCHHIQQ
HHCCCCHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DEQKRRATMHINRKPGEQIEVDWAGDPATIIDPDTSEILKAYIFVGVMTYSQYAYVEAFL
HHHHHHHEEEECCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DMKQKSWITAHVHMYEFFGGVARILVPDNCKTAVVHNGGWKDKQINETYQEMAEHYGTAI
HHHHCCEEEEHHHHHHHHCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEE
IPARVRTPKDKPNAEGTVGNISTWITAALRNEQFFSLAELNHAIREKLERFNRILFQKKE
EECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
GSRLDLFLEDEKPLLSPLPATRFELSDWKTATVQFNYHISVDGMLYSVPYEYIKKKVDVT
CCEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEEEEEEEECCEEEECCHHHHHCCCCEE
VTDTTIEIFYNHNRIASHRRLKGRPGQYSTITEHMPEDHQKYLEWNGDRFRKWAERIGIN
EEEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCC
TYTVVNAILTSKRVEQQTYRSCMGLLKLTDKYSEASLEAACKKALSYTASPSYKSIKNIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEE
VTGSVKTEPESSGSKTTHKAHGITRGADYYRR
EECCCCCCCCCCCCCCCHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]