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The map label for this gene is ykfC [H]

Identifier: 238925194

GI number: 238925194

Start: 2730619

End: 2732013

Strand: Reverse

Name: ykfC [H]

Synonym: EUBREC_2848

Alternate gene names: 238925194

Gene position: 2732013-2730619 (Counterclockwise)

Preceding gene: 238925196

Following gene: 238925191

Centisome position: 79.2

GC content: 42.29

Gene sequence:

>1395_bases
ATGGCAGAAAACATTGAAAACAATGGCTGTTCGCAAAGAGATAATGCGGAACATGAAGGGTATGTGAAAGCGTCTAGGTC
ATTCAATCGGATATGGAAAGAAAGAGACAGTGCACAGCCGAGACTTTTGGAAACGATACTGTATAAAGACAACTTTAACA
GAGCGTATAAGAGAGTTAAGGCAAACAAGGGAGCGCCGGGAATTGATGGCATGACCATTGAAGAGGCTCTTCCATATCTA
AAGGAACATCAACAAGAGATAACTGACCGCATTTATCGTGGAAAGTATACTCCGTCTCCAGTAAGACGAGTTGAAATTCC
CAAACCAGATGGTGGTGTGCGAAAGCTTGGCATACCAACAGTGATAGACCGTACACTTCAACAGGCAATAACCCAACAGT
TAGTGCCAATCTATGAACCGCTGTTTGCAGATGGTAGCTATGGCTATCGTCCGAACAGAAGTGCAAAAGATGCAATACTT
AAGGTTAAGGAGTATGCAGAACAAGGCTATACATTCGCTGTAGTCCTTGACTTGTCAAAGTACTTCGATACTCTTAATCA
CGAAATTCTCATCAATCTTCTACGAAAGAATGTAAAAGATGAACGTGTAGTACAGTTGATAAAGCGCTATCTGAAAAGCG
GTGTAATGGAAAACGGAGTGGTCATTGACACAGAGGAAGGCTCACCACAAGGTGGAAATCTATCACCATTGCTGGCAAAC
ATCTACCTCAATGAGTTCGACCAGGAATACCTGAAAAGAGGTGTTCCATGCATAAGATATGCAGATGACATCGTGCTTCT
TGCAAAGAGCAAGCGGGCATCAGAGAGACTCTTGGAAAGCAGTACAAAATATCTTGAGGAGAGGCTGAAACTTACAGTCA
ACCGGGAAAAGAGCCGTACAGTCAGCGTGTTTGCAATCCGAAATTTTAAATTCCTTGGCTTTGCATTGGGAAGGAACGGA
AAAGGCATATATGTCCGAGTTCATCCGAAGTCATGGAAGAAGTTTAAGTCCAGACTGAAGGAGTTATCTTCCCGTAAGCG
ATGTCAGTCAATCAAGCCAAGCCTTGAGAAAATCAAAGTATATGCAAGAGGATGGCTTAACTACTACGGAATTGCAAGCA
TGAAGAACAACATAGATGATATCAACGGATGGCTCTATCACAGAATACGCATGTGCATATGGAAACAGTGGAAGAAACCT
AGAACGAAATATAAAAATCTAGTCAAGCTGGGAATCCCAGAACACTATGCGGCAACAATAGCAAACAGTCGCAGAAAGTA
TTGGTATATCAGCAATAACAAAGCTGTGATTTGGGCGCTGAATAAAGAAAGACTGATAAACAGTGGCTTTTACGATTTAG
CCACAGCCTATCAGTCTGTGCACGTCAACTATTGA

Upstream 100 bases:

>100_bases
CTGAACGCATAGAAGTCAGCAGAGGTCATAGTAGCCGAGAGGTGAAGGACCGAATCAGTAGGAGTCTTGAGTATGACCGA
GAAAGGAGGAATGACCGTCT

Downstream 100 bases:

>100_bases
AAGCGCCGTATACCGAACGGTACGTACGGTGCTGTGAGAGGACGGCGGTTAGTCACCGCCTCCTACTCGATTTTATAGGT
TTATTATTTTAAAGGAGAAT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
KGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKP
RTKYKNLVKLGIPEHYAATIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY

Sequences:

>Translated_464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
KGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKP
RTKYKNLVKLGIPEHYAATIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
>Mature_463_residues
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYLK
EHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILK
VKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANI
YLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNGK
GIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKPR
TKYKNLVKLGIPEHYAATIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=198, Percent_Identity=35.3535353535354, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=247, Percent_Identity=30.3643724696356, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 53925; Mature: 53794

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCE
VSVFAIRNFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKV
EEEEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKPRTKYKNLVKLGIPEHYAATI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
ANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
HCCCCEEEEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCE
VSVFAIRNFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKV
EEEEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YARGWLNYYGIASMKNNIDDINGWLYHRIRMCIWKQWKKPRTKYKNLVKLGIPEHYAATI
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH
ANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
HCCCCEEEEEECCCEEEEEECHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]