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The map label for this gene is ygaF [C]

Identifier: 238924937

GI number: 238924937

Start: 2459923

End: 2461359

Strand: Reverse

Name: ygaF [C]

Synonym: EUBREC_2588

Alternate gene names: 238924937

Gene position: 2461359-2459923 (Counterclockwise)

Preceding gene: 238924938

Following gene: 238924936

Centisome position: 71.35

GC content: 46.97

Gene sequence:

>1437_bases
ATGTATGATGTAGTAATTATAGGAGCGGGAGTATCGGGAAGCGCCTGTGCAAGAGAGCTATCGAAATATAACCTGTCCAT
CTGCGTAGTGGAAAAGGAGGAGGACGTGTGCTGTGGCACCTCAAAGGCCAACAGTGCTATTGTCCATTCCGGAATTGACT
GTAAGACCGGTACACTTATGGCACAGATGAATATCCGTGGAAATGAGATGATGGACGAGCTTTCGAAGCAGCTTGATTTT
GAGTTCAGAAGAAACGGCTCGCTGATAGTGTGCTTTAGCGAGGACGATATGCCAAGGCTTAAGGAGCTTTACAATCAGGG
AATCGCAAATGGCGTGCCGGGACTTGAAATTCTTGATTCAAAGAAAGCACATGAGATGGAGCCGAATCTGTCTGATGAGG
TGGTGGCAGCTATTTACTGCCCGACAGGAGGCATTGTATGTCCGTTTGGCATGAATATTGCATTTGCTGAGAATGCTGCG
GCAAACGGTGTGGAGTTTTTATTTAACACCGAGGTGAAGGAGATACAAAAGGAGCAGACAGGCTATATTCTCATTACTCA
AAATGGAGAAATTCATGCACGCTGCGTTGTAAATGCAGCTGGTGTATATGCTGATGTATTTCACAACATGGTGAGTGAAA
ACAAAATCCATATCACACCAAGGCGCGGAGAGTACGAGCTATTAGACAGGGCAGCTGGTGGTATCGTTGACAAGACAATC
TTCCAGCTTCCGGGAAAATACGGCAAGGGCGTGCTTGTAACCCCGACAGTACACGGAAATATCCTAATCGGACCTACAGC
AGATGATCATGATGACAAGGATGGTACAAATACAACAAGAGCGGGCTTAGCGCATGTTACGACATCCGGCACACGTTCGG
TGCCGTCACTTCCTATGCGTCAGGTCATCACATCGTTTGCAGGAAACCGTGCACATGAGGACGGACATGAGTTTATCATC
GAGGAGCTTAAAGATGCACCATTTTTTGTGGACTGTGCAGGTATAGAGTCACCGGGCTTATCAAGTGCACCGGCTATCGG
TGAGAGAGTGGCAGCAATAGTTGAGAGGCTTTTTAAGCCTTCTAAAAATGCGGACTTTATCGAGACAAGAAAAGGTATTT
TAAATCCAAAGAAGCTTTCAGAGGATGAGTATAAAGAGCTGATAAAAGAAAAGCCTGAGTATGGTAACATAATCTGCCGC
TGTGAGATGATTACGGAGGGCGAGATAATGGATGCGGTAAACAGACCGTTAGGCGCAAAGTCGCTTGATGGTGTGAAGAG
ACGCACCAGAGCCGGAATGGGCAGGTGCCAGGCAGGCTTCTGTTCTCCGAGAACTATGGAGATTATCGCCAGGGAGAGAG
GCGTTTCGCAGCTTGACATCACTAAAAGCGGTGGAAAGTCAAAGATAGTTGTTGGAATGAGCAAGAATCGCGGATAG

Upstream 100 bases:

>100_bases
GAAGCGTAAAATGTGGAAAAAGGCTGTCGCCTGCGCATTTAACTGGGCGAAGGATGACTGAAAGTAAAAATATATATGGA
AATTGGTAGGAGAAAATAAC

Downstream 100 bases:

>100_bases
TCTGTCTTACTTCAAAGAGACAGGTAACGAAAGATTGATATTGGGTTAATATCAGATTAACATAGGGGGACAATATGGAA
TTTTACGATATTGTGATAGT

Product: FAD-dependent oxidoreductase

Products: glycerone phosphate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MYDVVIIGAGVSGSACARELSKYNLSICVVEKEEDVCCGTSKANSAIVHSGIDCKTGTLMAQMNIRGNEMMDELSKQLDF
EFRRNGSLIVCFSEDDMPRLKELYNQGIANGVPGLEILDSKKAHEMEPNLSDEVVAAIYCPTGGIVCPFGMNIAFAENAA
ANGVEFLFNTEVKEIQKEQTGYILITQNGEIHARCVVNAAGVYADVFHNMVSENKIHITPRRGEYELLDRAAGGIVDKTI
FQLPGKYGKGVLVTPTVHGNILIGPTADDHDDKDGTNTTRAGLAHVTTSGTRSVPSLPMRQVITSFAGNRAHEDGHEFII
EELKDAPFFVDCAGIESPGLSSAPAIGERVAAIVERLFKPSKNADFIETRKGILNPKKLSEDEYKELIKEKPEYGNIICR
CEMITEGEIMDAVNRPLGAKSLDGVKRRTRAGMGRCQAGFCSPRTMEIIARERGVSQLDITKSGGKSKIVVGMSKNRG

Sequences:

>Translated_478_residues
MYDVVIIGAGVSGSACARELSKYNLSICVVEKEEDVCCGTSKANSAIVHSGIDCKTGTLMAQMNIRGNEMMDELSKQLDF
EFRRNGSLIVCFSEDDMPRLKELYNQGIANGVPGLEILDSKKAHEMEPNLSDEVVAAIYCPTGGIVCPFGMNIAFAENAA
ANGVEFLFNTEVKEIQKEQTGYILITQNGEIHARCVVNAAGVYADVFHNMVSENKIHITPRRGEYELLDRAAGGIVDKTI
FQLPGKYGKGVLVTPTVHGNILIGPTADDHDDKDGTNTTRAGLAHVTTSGTRSVPSLPMRQVITSFAGNRAHEDGHEFII
EELKDAPFFVDCAGIESPGLSSAPAIGERVAAIVERLFKPSKNADFIETRKGILNPKKLSEDEYKELIKEKPEYGNIICR
CEMITEGEIMDAVNRPLGAKSLDGVKRRTRAGMGRCQAGFCSPRTMEIIARERGVSQLDITKSGGKSKIVVGMSKNRG
>Mature_478_residues
MYDVVIIGAGVSGSACARELSKYNLSICVVEKEEDVCCGTSKANSAIVHSGIDCKTGTLMAQMNIRGNEMMDELSKQLDF
EFRRNGSLIVCFSEDDMPRLKELYNQGIANGVPGLEILDSKKAHEMEPNLSDEVVAAIYCPTGGIVCPFGMNIAFAENAA
ANGVEFLFNTEVKEIQKEQTGYILITQNGEIHARCVVNAAGVYADVFHNMVSENKIHITPRRGEYELLDRAAGGIVDKTI
FQLPGKYGKGVLVTPTVHGNILIGPTADDHDDKDGTNTTRAGLAHVTTSGTRSVPSLPMRQVITSFAGNRAHEDGHEFII
EELKDAPFFVDCAGIESPGLSSAPAIGERVAAIVERLFKPSKNADFIETRKGILNPKKLSEDEYKELIKEKPEYGNIICR
CEMITEGEIMDAVNRPLGAKSLDGVKRRTRAGMGRCQAGFCSPRTMEIIARERGVSQLDITKSGGKSKIVVGMSKNRG

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=269, Percent_Identity=33.0855018587361, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI87082148, Length=405, Percent_Identity=26.6666666666667, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788574, Length=491, Percent_Identity=22.6069246435845, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565764, Length=276, Percent_Identity=28.9855072463768, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24585081, Length=277, Percent_Identity=29.2418772563177, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5

Molecular weight: Translated: 51914; Mature: 51914

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDVVIIGAGVSGSACARELSKYNLSICVVEKEEDVCCGTSKANSAIVHSGIDCKTGTLM
CEEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEE
AQMNIRGNEMMDELSKQLDFEFRRNGSLIVCFSEDDMPRLKELYNQGIANGVPGLEILDS
EEECCCCHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCC
KKAHEMEPNLSDEVVAAIYCPTGGIVCPFGMNIAFAENAAANGVEFLFNTEVKEIQKEQT
CCCCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCEEEEECCHHHHHHHHCC
GYILITQNGEIHARCVVNAAGVYADVFHNMVSENKIHITPRRGEYELLDRAAGGIVDKTI
CEEEEECCCCEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCHHHHHH
FQLPGKYGKGVLVTPTVHGNILIGPTADDHDDKDGTNTTRAGLAHVTTSGTRSVPSLPMR
HHCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCHH
QVITSFAGNRAHEDGHEFIIEELKDAPFFVDCAGIESPGLSSAPAIGERVAAIVERLFKP
HHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
SKNADFIETRKGILNPKKLSEDEYKELIKEKPEYGNIICRCEMITEGEIMDAVNRPLGAK
CCCCCHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHCCCCCCC
SLDGVKRRTRAGMGRCQAGFCSPRTMEIIARERGVSQLDITKSGGKSKIVVGMSKNRG
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCC
>Mature Secondary Structure
MYDVVIIGAGVSGSACARELSKYNLSICVVEKEEDVCCGTSKANSAIVHSGIDCKTGTLM
CEEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEE
AQMNIRGNEMMDELSKQLDFEFRRNGSLIVCFSEDDMPRLKELYNQGIANGVPGLEILDS
EEECCCCHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCC
KKAHEMEPNLSDEVVAAIYCPTGGIVCPFGMNIAFAENAAANGVEFLFNTEVKEIQKEQT
CCCCCCCCCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCEEEEECCHHHHHHHHCC
GYILITQNGEIHARCVVNAAGVYADVFHNMVSENKIHITPRRGEYELLDRAAGGIVDKTI
CEEEEECCCCEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCHHHHHH
FQLPGKYGKGVLVTPTVHGNILIGPTADDHDDKDGTNTTRAGLAHVTTSGTRSVPSLPMR
HHCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCHH
QVITSFAGNRAHEDGHEFIIEELKDAPFFVDCAGIESPGLSSAPAIGERVAAIVERLFKP
HHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
SKNADFIETRKGILNPKKLSEDEYKELIKEKPEYGNIICRCEMITEGEIMDAVNRPLGAK
CCCCCHHHHHHCCCCCHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHCCCCCCC
SLDGVKRRTRAGMGRCQAGFCSPRTMEIIARERGVSQLDITKSGGKSKIVVGMSKNRG
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sn-glycerol 3-phosphate; acceptor

Specific reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]