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The map label for this gene is rnfE [H]

Identifier: 238924006

GI number: 238924006

Start: 1532024

End: 1532752

Strand: Direct

Name: rnfE [H]

Synonym: EUBREC_1644

Alternate gene names: 238924006

Gene position: 1532024-1532752 (Clockwise)

Preceding gene: 238924005

Following gene: 238924007

Centisome position: 44.41

GC content: 44.31

Gene sequence:

>729_bases
ATGAACAAATATGTAGAGCGTTTATATAATGGTATCATTAAGGAAAATCCTACCTTTGTACTTATGCTTGGTATGTGTCC
TACACTGGCTGTTACATCCAGTGCGGTAAACGGACTTGGAATGGGACTTTCCACCACGGTGGTACTTATATGTTCAAACC
TTTTGATTTCACTTTTCAGAAAAGTGATTCCTAACGGAGTGCGTATGCCGGCGTATATCGTCATAGTTGCATCTCTTGTT
ACAGTAGTACAGTTTTTAATGCAGGCTTATCTGCCTAGCCTTTCAGCAGCACTTGGTGTATACATCCCACTTATCGTGGT
TAACTGTATCATCCTCGGACGTGCCGAGAGCTATGCTTCAAAGAATCCGCCTGTAGAGTCTATCTTTGATGGAATGGGAA
TGGGACTTGGATTTACCATGGGTCTTACAATCATCGGACTTATCCGTGAAATCTTAGGTGCAGGAACATTCTTCAACATC
AAGATTTTCGGTGACTGGTTTACACCAATCACAATCTTTATCATGGCACCGGGAGCCTTCCTCGTACTTGGTTTCCTCGT
TGCAGGCATGAATATCATCCGTAAAAAGATGGAAGCAAAGGGTACACCTCTTGCAGAGCCGGCAGGCTGCCTTTCAGGAG
ATTGTGCACATTGTGGAGCATCATGTCCATCAGCAAAAGCAGCACAGGCCGCTGTTGCGCCTAACACTACAGAAGGAGGG
GATAAATAA

Upstream 100 bases:

>100_bases
AGGCCATCACAGGCTCAACCATCACATCAAAGGCTATGGCCAACGGCTGCAACGCAGCTATTACTTACTTCCAGAATAAA
TTACAGGGAGGTGCCAACTA

Downstream 100 bases:

>100_bases
TGGGTACATTAGGTCATTTACTGCTCATTGCAGTAGCATATGCAATAGTTAACAACGTAGTACTTAGCCAGTTCCTTGGT
ATCTGTCCTTTCCTCGGCGT

Product: rnfE/nqrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNKYVERLYNGIIKENPTFVLMLGMCPTLAVTSSAVNGLGMGLSTTVVLICSNLLISLFRKVIPNGVRMPAYIVIVASLV
TVVQFLMQAYLPSLSAALGVYIPLIVVNCIILGRAESYASKNPPVESIFDGMGMGLGFTMGLTIIGLIREILGAGTFFNI
KIFGDWFTPITIFIMAPGAFLVLGFLVAGMNIIRKKMEAKGTPLAEPAGCLSGDCAHCGASCPSAKAAQAAVAPNTTEGG
DK

Sequences:

>Translated_242_residues
MNKYVERLYNGIIKENPTFVLMLGMCPTLAVTSSAVNGLGMGLSTTVVLICSNLLISLFRKVIPNGVRMPAYIVIVASLV
TVVQFLMQAYLPSLSAALGVYIPLIVVNCIILGRAESYASKNPPVESIFDGMGMGLGFTMGLTIIGLIREILGAGTFFNI
KIFGDWFTPITIFIMAPGAFLVLGFLVAGMNIIRKKMEAKGTPLAEPAGCLSGDCAHCGASCPSAKAAQAAVAPNTTEGG
DK
>Mature_242_residues
MNKYVERLYNGIIKENPTFVLMLGMCPTLAVTSSAVNGLGMGLSTTVVLICSNLLISLFRKVIPNGVRMPAYIVIVASLV
TVVQFLMQAYLPSLSAALGVYIPLIVVNCIILGRAESYASKNPPVESIFDGMGMGLGFTMGLTIIGLIREILGAGTFFNI
KIFGDWFTPITIFIMAPGAFLVLGFLVAGMNIIRKKMEAKGTPLAEPAGCLSGDCAHCGASCPSAKAAQAAVAPNTTEGG
DK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=41.2322274881517, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787914, Length=163, Percent_Identity=28.2208588957055, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 25446; Mature: 25446

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYVERLYNGIIKENPTFVLMLGMCPTLAVTSSAVNGLGMGLSTTVVLICSNLLISLFR
CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KVIPNGVRMPAYIVIVASLVTVVQFLMQAYLPSLSAALGVYIPLIVVNCIILGRAESYAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
KNPPVESIFDGMGMGLGFTMGLTIIGLIREILGAGTFFNIKIFGDWFTPITIFIMAPGAF
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCHHH
LVLGFLVAGMNIIRKKMEAKGTPLAEPAGCLSGDCAHCGASCPSAKAAQAAVAPNTTEGG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCC
DK
CC
>Mature Secondary Structure
MNKYVERLYNGIIKENPTFVLMLGMCPTLAVTSSAVNGLGMGLSTTVVLICSNLLISLFR
CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KVIPNGVRMPAYIVIVASLVTVVQFLMQAYLPSLSAALGVYIPLIVVNCIILGRAESYAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
KNPPVESIFDGMGMGLGFTMGLTIIGLIREILGAGTFFNIKIFGDWFTPITIFIMAPGAF
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCHHH
LVLGFLVAGMNIIRKKMEAKGTPLAEPAGCLSGDCAHCGASCPSAKAAQAAVAPNTTEGG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCC
DK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA