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The map label for this gene is rbgA [H]

Identifier: 238923884

GI number: 238923884

Start: 1391937

End: 1392782

Strand: Direct

Name: rbgA [H]

Synonym: EUBREC_1512

Alternate gene names: 238923884

Gene position: 1391937-1392782 (Clockwise)

Preceding gene: 238923883

Following gene: 238923885

Centisome position: 40.35

GC content: 45.74

Gene sequence:

>846_bases
ATGAATTTTCAGTGGTACCCTGGGCATATGACCAAGGCAAAGCGTCAGATGCAGGAGGACATTAAATTAATAGATCTGGT
TATAGAGCTTGTGGATGCAAGAATTCCACTATCCAGCCGTAATCCGGACATTGATGAGCTTGGAAAAAACAAATACAGGC
TTATTCTGATGAACAAGGCGGATCTGGCCGACAAGGAGCGTACCAGGGAGTGGAGTGCATTTTTCAAGGAAAAGGGCTTT
TTTGTAGTCAGTCTTGATGCTAGAAGCAAGTCAGGCATGAAGAGCATCACAGATATCGTGATGGAGGCCTGCAAGGAAAA
GATTGAAAGAGACCGAAAGCGTGGTATCAAAAACAGACCGGTAAGAGCTATGGTGGTTGGTATTCCAAACGTCGGAAAGT
CCACATTTATCAACTCATACGCCGGAAAAGCCTGTGCCAAGACAGGAAACAAGCCGGGCGTGACAAAGGGCAAGCAGTGG
ATCAGGCTCAATAAAAGTGTTGAGCTGCTCGATACCCCGGGCATACTGTGGCCGAAATTTGAGGATCAGACAGTGGGACT
TAGACTTGCGCTCATCGGTTCGATAAAGGATGAGATTTTAAATGTTGATGAGCTTGCCGTGGAACTTGTAAAGTTCCTAA
AAGCAGAGTATCCGGGGCTTTTGGCACAAAGATACGAGGTGAGCGAGGAAAATGATATCATAGAGCTTATAAGAGCTGTC
GCTGTCAACAGAAAATGCCTTTCAAAGGGAGGGGAGCCTGATTACAGCAAGGCGGCTGCACTCATCATAGATGATTTCAG
AAGTGGTAAATTAGGTCATATCACTTTGGAGAGACCGGAGATATAG

Upstream 100 bases:

>100_bases
TATTATCGGCAAGGCATGGTTTAGATTTTCAGGCCTTGGAAGCTTTGGAACAATCAAGTAGCAATAGTTATAACATATAT
AGATAAAGGACAGGTGAATT

Downstream 100 bases:

>100_bases
AAGAATAGTTACGAAAAATAGACGATAGGACAAGGATATGTCAGCAGAAAAAATAGGCGATATTAAGGAACAACTGAAAA
GTATCACAGATTCACAGCTT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGF
FVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGKACAKTGNKPGVTKGKQW
IRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGLLAQRYEVSEENDIIELIRAV
AVNRKCLSKGGEPDYSKAAALIIDDFRSGKLGHITLERPEI

Sequences:

>Translated_281_residues
MNFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGF
FVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGKACAKTGNKPGVTKGKQW
IRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGLLAQRYEVSEENDIIELIRAV
AVNRKCLSKGGEPDYSKAAALIIDDFRSGKLGHITLERPEI
>Mature_281_residues
MNFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKADLADKERTREWSAFFKEKGF
FVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRPVRAMVVGIPNVGKSTFINSYAGKACAKTGNKPGVTKGKQW
IRLNKSVELLDTPGILWPKFEDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGLLAQRYEVSEENDIIELIRAV
AVNRKCLSKGGEPDYSKAAALIIDDFRSGKLGHITLERPEI

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=296, Percent_Identity=33.7837837837838, Blast_Score=144, Evalue=7e-35,
Organism=Homo sapiens, GI7019419, Length=252, Percent_Identity=25.7936507936508, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI296317324, Length=274, Percent_Identity=27.3722627737226, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI9506611, Length=274, Percent_Identity=27.3722627737226, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI45643129, Length=277, Percent_Identity=26.7148014440433, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI45643127, Length=277, Percent_Identity=26.7148014440433, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI45593130, Length=277, Percent_Identity=26.7148014440433, Blast_Score=78, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17534827, Length=280, Percent_Identity=27.8571428571429, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25143545, Length=289, Percent_Identity=28.3737024221453, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI115535155, Length=289, Percent_Identity=28.3737024221453, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193211047, Length=221, Percent_Identity=28.9592760180996, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI32563985, Length=247, Percent_Identity=25.5060728744939, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI71990926, Length=247, Percent_Identity=25.5060728744939, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI32563983, Length=247, Percent_Identity=25.1012145748988, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=29.9465240641711, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=281, Percent_Identity=29.1814946619217, Blast_Score=95, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6323744, Length=274, Percent_Identity=28.4671532846715, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6321339, Length=312, Percent_Identity=27.8846153846154, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320842, Length=284, Percent_Identity=28.8732394366197, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85815858, Length=302, Percent_Identity=29.4701986754967, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI28572990, Length=285, Percent_Identity=29.4736842105263, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19922460, Length=252, Percent_Identity=27.3809523809524, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31777; Mature: 31777

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEECC
DLADKERTREWSAFFKEKGFFVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRP
CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VRAMVVGIPNVGKSTFINSYAGKACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKF
CEEEEEECCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCC
EDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGLLAQRYEVSEENDIIELIRAV
CCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHH
AVNRKCLSKGGEPDYSKAAALIIDDFRSGKLGHITLERPEI
HHCHHHHHCCCCCCHHHHHHHEEECCCCCCEEEEEECCCCC
>Mature Secondary Structure
MNFQWYPGHMTKAKRQMQEDIKLIDLVIELVDARIPLSSRNPDIDELGKNKYRLILMNKA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEECC
DLADKERTREWSAFFKEKGFFVVSLDARSKSGMKSITDIVMEACKEKIERDRKRGIKNRP
CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VRAMVVGIPNVGKSTFINSYAGKACAKTGNKPGVTKGKQWIRLNKSVELLDTPGILWPKF
CEEEEEECCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCC
EDQTVGLRLALIGSIKDEILNVDELAVELVKFLKAEYPGLLAQRYEVSEENDIIELIRAV
CCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHH
AVNRKCLSKGGEPDYSKAAALIIDDFRSGKLGHITLERPEI
HHCHHHHHCCCCCCHHHHHHHEEECCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]