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The map label for this gene is ypdB [C]

Identifier: 238923726

GI number: 238923726

Start: 1222819

End: 1223616

Strand: Direct

Name: ypdB [C]

Synonym: EUBREC_1348

Alternate gene names: 238923726

Gene position: 1222819-1223616 (Clockwise)

Preceding gene: 238923725

Following gene: 238923727

Centisome position: 35.45

GC content: 31.33

Gene sequence:

>798_bases
ATGTACAAAATTAAAAAAACACAACCAACCAAACGAGGAAATATGCAAAATTTAGAGAGGGGGGAAAAACGTATGTTTAG
AATTGCTATATGCGATGATGAAAAGATTTTTAGAGATGACCTAAAGGAAATACTTATACGTTATATGACTGACAGAGGAA
TAATGCTTGAAATTGATACTTTTAGTTCAGGAAAAGAATTTGTTGAACTGGGAATTGAAATGGTAAAATATAAGATTGTT
TTTCTGGATATCAACATGGATGAACTGGATGGAATTATGACAGCAAAAAAGATCCGGGAAAACAGCAAGGATATGTTTAT
TGTTTTTGTTACAGCCTTTGTAAACTATACGATAGAAGGATATAAGGTAGATGCAGTAAGATATATTTTAAAGGACAATA
AAAATCTGGTTGCCAGTGTTTATGAGTGCATGGATGCAATTCATGAAAAAATGGATTATAAGATTACTTGGGCTGAATTT
GATTTCTGCGAAGGTACAAGGAAAGTTTCATTGAATCGCATATTGTATATTGAGAGTAAATTACATAAATTGGAGTTTCA
TGTAATGGAGGATTGTCTGCAAAAATATACATTACAAGGGACGCTAAATGAAATAGATGATAAGTTTGCCGGAAATGATT
TTCTGCGGATACATCAGAGCTTTCTGGTTAATATGAAATTCATTAAAAATATAAGCAGATACAGAGTATTGCTGAATAAT
GGAATTCTATTAGATATAGCTAGAGCGAGATATAAATATGTAGAAGAAAAGTTTATCGCTTATAGAGGTGAAGTATAA

Upstream 100 bases:

>100_bases
TAAAATGGTTTTATATTATTCTAATTGAACGAGGGAAAATAAGCTATGTTTATATGGAAGTAAATAAAGTTTTTGTTGGA
AGGTGCCAAAATATAAAAAT

Downstream 100 bases:

>100_bases
ATGTTTGTTTACATTCAGAGTCTTTTGATTATGATGTTGGAAATATTATGCTGCAAAATTTTTTTTGAAGCATTTGGAAT
AAAAAGAGAGGAAAATAATT

Product: transcriptional regulator, LytR/AlgR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MYKIKKTQPTKRGNMQNLERGEKRMFRIAICDDEKIFRDDLKEILIRYMTDRGIMLEIDTFSSGKEFVELGIEMVKYKIV
FLDINMDELDGIMTAKKIRENSKDMFIVFVTAFVNYTIEGYKVDAVRYILKDNKNLVASVYECMDAIHEKMDYKITWAEF
DFCEGTRKVSLNRILYIESKLHKLEFHVMEDCLQKYTLQGTLNEIDDKFAGNDFLRIHQSFLVNMKFIKNISRYRVLLNN
GILLDIARARYKYVEEKFIAYRGEV

Sequences:

>Translated_265_residues
MYKIKKTQPTKRGNMQNLERGEKRMFRIAICDDEKIFRDDLKEILIRYMTDRGIMLEIDTFSSGKEFVELGIEMVKYKIV
FLDINMDELDGIMTAKKIRENSKDMFIVFVTAFVNYTIEGYKVDAVRYILKDNKNLVASVYECMDAIHEKMDYKITWAEF
DFCEGTRKVSLNRILYIESKLHKLEFHVMEDCLQKYTLQGTLNEIDDKFAGNDFLRIHQSFLVNMKFIKNISRYRVLLNN
GILLDIARARYKYVEEKFIAYRGEV
>Mature_265_residues
MYKIKKTQPTKRGNMQNLERGEKRMFRIAICDDEKIFRDDLKEILIRYMTDRGIMLEIDTFSSGKEFVELGIEMVKYKIV
FLDINMDELDGIMTAKKIRENSKDMFIVFVTAFVNYTIEGYKVDAVRYILKDNKNLVASVYECMDAIHEKMDYKITWAEF
DFCEGTRKVSLNRILYIESKLHKLEFHVMEDCLQKYTLQGTLNEIDDKFAGNDFLRIHQSFLVNMKFIKNISRYRVLLNN
GILLDIARARYKYVEEKFIAYRGEV

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=229, Percent_Identity=24.0174672489083, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 31510; Mature: 31510

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKIKKTQPTKRGNMQNLERGEKRMFRIAICDDEKIFRDDLKEILIRYMTDRGIMLEIDT
CCCCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
FSSGKEFVELGIEMVKYKIVFLDINMDELDGIMTAKKIRENSKDMFIVFVTAFVNYTIEG
CCCCHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHEECC
YKVDAVRYILKDNKNLVASVYECMDAIHEKMDYKITWAEFDFCEGTRKVSLNRILYIESK
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEEEEEEHH
LHKLEFHVMEDCLQKYTLQGTLNEIDDKFAGNDFLRIHQSFLVNMKFIKNISRYRVLLNN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GILLDIARARYKYVEEKFIAYRGEV
CEEEEHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYKIKKTQPTKRGNMQNLERGEKRMFRIAICDDEKIFRDDLKEILIRYMTDRGIMLEIDT
CCCCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
FSSGKEFVELGIEMVKYKIVFLDINMDELDGIMTAKKIRENSKDMFIVFVTAFVNYTIEG
CCCCHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHEECC
YKVDAVRYILKDNKNLVASVYECMDAIHEKMDYKITWAEFDFCEGTRKVSLNRILYIESK
EEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEEEEEEHH
LHKLEFHVMEDCLQKYTLQGTLNEIDDKFAGNDFLRIHQSFLVNMKFIKNISRYRVLLNN
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GILLDIARARYKYVEEKFIAYRGEV
CEEEEHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]