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The map label for this gene is ysgA [H]

Identifier: 238923439

GI number: 238923439

Start: 967218

End: 968009

Strand: Direct

Name: ysgA [H]

Synonym: EUBREC_1059

Alternate gene names: 238923439

Gene position: 967218-968009 (Clockwise)

Preceding gene: 238923438

Following gene: 238923440

Centisome position: 28.04

GC content: 45.83

Gene sequence:

>792_bases
ATGATTACAAGTGCATCAAACAAAAGCATAAAAAATGTGCAGGCTCTTTTAAGCAAGGCAAAGGAGCGGAAAAAGCAGGG
CGTATTCGTGGTTGAGGGTCCAAAGATGAGCTTTGAGGCGCCATATGACTGGGTAAGTGCCGTATATATGTCTGAGTCAT
TTTTTAATGATGACAGGTTTAAGGAAGAGAAGAAGCGTTTCCTTGACAAAACAGAAATAGTGAGTGACTCGGTGTTTAAG
AGCATGTCTGACACGCAGACTCCGCAGGGTGTGCTCGCTATAGTAAAGATGCCGCACTATGAGATAGATGAACTTTTTAA
GGGCGACAAGACAGAGCTTCTTGTGCTTGAGAGTATACAGGATCCGGGAAACTTAGGCACTATGGTCCGTACCGGTGAGG
GCGCAGGTGTAAGCGGTATCATAATGAACCGTACTACGGTTGACATTTTTAATCCAAAGACTGTGCGCTCAACCATGGGC
TCACTCTACCGTGTGCCGTTTTACATCACAGATGACCTTCCGGAGACTATAGAGTATGCAAAGTCAAAGGGAGTTTCTCT
CTACGCAGCTCATTTAAAGGGTAAGTGCTCTTATGACAGACCGGACTACACCGGAGCCTGTGGCTTTATGATAGGAAATG
AGGGCAATGGATTATCAGATGAGATAGCTGACATGGCGGACACATATATCCGCATCCCTATGGAGGGAGCTGTGGAGTCG
CTTAATGCCGCAATATCAGCCACTTTGCTCATGTATGAGTGCAATCGTCAGAGAAGGCTTTTGGGAGAATAA

Upstream 100 bases:

>100_bases
GCAGGGGCATTTATGCATTCGGAGAAAGACGAATGTTAATCATAAATGAGGGGCAAAATACTTTTTGACCCTCATATCAT
CAATATAGAAAGAGAAGAAA

Downstream 100 bases:

>100_bases
TATGCGTATTTGGTTTAAGATTTATACTGACACGCACCTGATGCGTGATATTACAATAGAAAATGACAGTGACGACACAC
GTACACACAAGATTTTTAAG

Product: RNA methyltransferase, TrmH family, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MITSASNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFNDDRFKEEKKRFLDKTEIVSDSVFK
SMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMG
SLYRVPFYITDDLPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVES
LNAAISATLLMYECNRQRRLLGE

Sequences:

>Translated_263_residues
MITSASNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFNDDRFKEEKKRFLDKTEIVSDSVFK
SMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMG
SLYRVPFYITDDLPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVES
LNAAISATLLMYECNRQRRLLGE
>Mature_263_residues
MITSASNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFNDDRFKEEKKRFLDKTEIVSDSVFK
SMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMG
SLYRVPFYITDDLPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVES
LNAAISATLLMYECNRQRRLLGE

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=313, Percent_Identity=26.517571884984, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1790623, Length=255, Percent_Identity=25.8823529411765, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790083, Length=168, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29262; Mature: 29262

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSASNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFNDDRF
CCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHH
KEEKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCEEEEEECCC
DPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYA
CCCCCCCEEEECCCCCEEEEEECCEEEEEECCHHHHHHHHHHEECCEEEECCCHHHHHHH
KSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVES
HCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEEECCHHHHHHH
LNAAISATLLMYECNRQRRLLGE
HHHHHHHHHHEEHHCCHHHCCCC
>Mature Secondary Structure
MITSASNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEAPYDWVSAVYMSESFFNDDRF
CCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHH
KEEKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCEEEEEECCC
DPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYA
CCCCCCCEEEECCCCCEEEEEECCEEEEEECCHHHHHHHHHHEECCEEEECCCHHHHHHH
KSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVES
HCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHEEECCHHHHHHH
LNAAISATLLMYECNRQRRLLGE
HHHHHHHHHHEEHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]