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The map label for this gene is agaR [H]

Identifier: 238922901

GI number: 238922901

Start: 447837

End: 450695

Strand: Direct

Name: agaR [H]

Synonym: EUBREC_0489

Alternate gene names: 238922901

Gene position: 447837-450695 (Clockwise)

Preceding gene: 238922900

Following gene: 238922902

Centisome position: 12.98

GC content: 46.31

Gene sequence:

>2859_bases
ATGATATGGAGTGATTTTATGGCAATTATATTTAATCCAAACAAGAAAATTTTTACTTTACAGACAGCTCACACCACATA
TCAGATGCAGGTGGACAGACTGGGCTATCTGCTGCATCTGTACTACGGAGCAAAAAGCACATGTGATATGGACTATGTGC
TGACATATGCTGACAGAGGCTTTTCAGGCAATCCTTACGCAGCAGGCATGAACCGTACATATTCGCTTGATACGCTGCCA
CAGGAGTATCCGACACTTGGCACAGGCGATTTCAGAAATATTGCGCTTGATATCAAAAACGAACAGGGCACTGAGAGTGT
TGAGCTTCTTTATAAGAGTTATGAAATCAGAGACGGAAAATACGCTCTAAAGGGACTTCCGGCAGTGTGGGCATCTGATG
ATGAAGCGCAGACTCTTGAAATAGTTCTTGGCGATGATATCGCAGGCGTTGAGGTGCATCTGCTTTATGGCGTGCTCGAG
GCTTGTGATGTCATCACAAGAAGTGTGCTCATTAAAAATACAGGCAGTGGGAATATTACAATTGAAAAGGCTCATGCTGC
CTGCCTGGATATGGTTTACGGAGATTATGATGTGATCAGATTCTACGGTAAGCATGCCATGGAGCGCAATCTTGAGCGCA
CACACTTAGGACACGGCACACTTTCATTCGGAAGCCGCAGAGGAACCTCAAGCCACCAGTACAATCCGGCGGTTATTCTC
GCACAGCGCGATACTACAGAAAATGCAGGAGACTGCTATGGTATGCTTTTTGTATACAGTGGCAACTTCTCATGTGAGGC
AGAGAAGGACCAGATTAACCAGACACGCCTTTTAATGGGGCTTTCCGATGAGCTGTTTTCATATCCGCTTGCGGCAGGAG
AGACCTTTACAGTGCCTGAGGTGATTATGTCATACTCGGCAGACGGTTTCTCACAGCTTTCCCATCAGTACCACACCTGC
ATCAGTGAGCATGTGTGCAGGAGCAGATTTGCACATGAGGTAAGACCGGTGCTCATCAATAGCTGGGAGGCTGCTTACTT
TGACTTTACCGGTGATACGATAGTAGATCTTGCAAAGGAGGCCGCATCACTGGGCATAGATATGGTGGTCATGGATGACG
GCTGGTTTGGAAAGAGAGATGATGATAATTCATCACTCGGAGACTGGTTTGTGAATGAGAAAAAGCTTGGCGGAACACTT
TCTGAGCTCATCGACAGAGTGCATGCACAGGGAGTGAAATTTGGAATATGGATTGAGCCTGAGATGGTGAATGAGGACAG
TAATCTGTACAGAGAGCATCCTGACTGGGCTATCCAGATTCCGGGAAAGCTTCCTGTACGCTCAAGAAACCAGCTTATTT
TAGACTTTTCGAGAAAAGAAGTCAGGGACAATATTTTCAATCAGATCTGCGCAGTGTTTGACCAGGGAAAAATCGACTAC
GTGAAGTGGGATATGAACAGAAGCATGGCTGATGTGTATGCAGGAAATCTTGCATACGACTATGTGCTTGGAGTGTATGA
TTTTATGGAGCGTCTGGTGACAAGATATCCGGATATACTTCTTGAGGGCTGCAGCGGTGGAGGTGGACGATTTGATGCAG
GCATGCTCTACTACAGTCCACAGATATGGTGCAGTGACAATACAGATGCCATAAACCGTACAAGAATACAGTATGGCACA
TCGTTCTTCTATCCGGTATCATCCATGGGAGCGCATGTATCGGCAGTGCCAAATCATCAGACAGGCAGAGTGACAAGCCT
TAAAACAAGAGGCATCACAGCCATGGCAGGAACCTTTGGCTATGAGCTGAATCCGGCCCTTCTGTCGGATGAGGAAAAGG
AAGAAATCAGAGAGCAGATAAAGACCTTTAAGAAGTATGAGATGCTTATAAATGAGGGCACCTACTGGCGTCTTACAAGC
CCATTTGAGGATGAGGTGGCTGCTTGGATGTCTGTCTCAAGGACAAAGGACAGGGCGCTTGTGAGCGTGGTTCGTCTGTA
TGCAGAGGCAAATGCGGCAGCATGCTATGTGAAGCTTAAAGGCTTGGAGTCTGATGCAGTATATATTGAGGAAAATACCG
GCAGGCAGTACACAGGTGCAGCACTGATGAATGCAGGAATACCGCTTCCGTTTGCCGTAAAGGAGTATGAGGCATATCAG
TTTTCATTTATCAGGCTTGATGAGGCAAAGAAGCTGTATGATGAGATAAAGAAGGTGTGCGGCAATCTAAAATTAAATGA
GGCTGACACTGCAGATAGTGCTTCTGATAACCGTATTGTAATAAGCATCTACGGCGGCTCAGGCTCAGGAAAGACAACGA
TTGCAGCAGCCCTGCAGCAGTATTTTCTTAACGATAATACAGCCTGCTATGTGCTGACCGGGGACAATTATCCACACCGT
ATCCCGATGAGAAACGACGAGGAACGCCTTAATGTGTATAACGAGTCCGGCGAGGATGGCTTACGTGGATATCTTGGAAC
ACCTAAGGAGATTGACTTTGACAGGATTAACAAGGAGCTTTCAGAGTTTAAGGCAGGAAAAGATATAATTGAGATAAAGC
ATATGGGCCGCGAGGACGGTGATATCTCATATGACGAGACTGATTTCACAGGAATTAAAGTGCTCATCCTGGAGTGGACC
CATGGAGGAAGCGAATACCTTAAGGGTGTTGATATACCTGTATTTTTGGAGAGCTCGCCTGAGGAGACAAAGGCACGCCG
CATTAAGAGAGGACGTGACGAAAACGCCGCAAGCCCTTTCATATGCCGCGTGGTAGAATTGGAGCAGGAAAAGCTTGATT
TGCAGGGAAAAAATGCGCGTATCGTAGTTGGAAAGGATGGCAAAGTCTATGAACAATAA

Upstream 100 bases:

>100_bases
GATACCGATACTTATATTCTATATAATCTGCCAAAAGCAGATATTAAACGGTGTTGCAAACGGTGCAATCAAGGGATAAT
TTTTAAACACTATTTTAACA

Downstream 100 bases:

>100_bases
ACCTATGCTTAATGCATATCCTGACAGTCTGGGCGGTAAGCTTTCCGATATCGCAGCGCTGCTCAAAAAGAAGGAAATGC
AGGACACATTTTCATCATTT

Product: alpha-galactosidase

Products: NA

Alternate protein names: Melibiase [H]

Number of amino acids: Translated: 952; Mature: 952

Protein sequence:

>952_residues
MIWSDFMAIIFNPNKKIFTLQTAHTTYQMQVDRLGYLLHLYYGAKSTCDMDYVLTYADRGFSGNPYAAGMNRTYSLDTLP
QEYPTLGTGDFRNIALDIKNEQGTESVELLYKSYEIRDGKYALKGLPAVWASDDEAQTLEIVLGDDIAGVEVHLLYGVLE
ACDVITRSVLIKNTGSGNITIEKAHAACLDMVYGDYDVIRFYGKHAMERNLERTHLGHGTLSFGSRRGTSSHQYNPAVIL
AQRDTTENAGDCYGMLFVYSGNFSCEAEKDQINQTRLLMGLSDELFSYPLAAGETFTVPEVIMSYSADGFSQLSHQYHTC
ISEHVCRSRFAHEVRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDGWFGKRDDDNSSLGDWFVNEKKLGGTL
SELIDRVHAQGVKFGIWIEPEMVNEDSNLYREHPDWAIQIPGKLPVRSRNQLILDFSRKEVRDNIFNQICAVFDQGKIDY
VKWDMNRSMADVYAGNLAYDYVLGVYDFMERLVTRYPDILLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAINRTRIQYGT
SFFYPVSSMGAHVSAVPNHQTGRVTSLKTRGITAMAGTFGYELNPALLSDEEKEEIREQIKTFKKYEMLINEGTYWRLTS
PFEDEVAAWMSVSRTKDRALVSVVRLYAEANAAACYVKLKGLESDAVYIEENTGRQYTGAALMNAGIPLPFAVKEYEAYQ
FSFIRLDEAKKLYDEIKKVCGNLKLNEADTADSASDNRIVISIYGGSGSGKTTIAAALQQYFLNDNTACYVLTGDNYPHR
IPMRNDEERLNVYNESGEDGLRGYLGTPKEIDFDRINKELSEFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWT
HGGSEYLKGVDIPVFLESSPEETKARRIKRGRDENAASPFICRVVELEQEKLDLQGKNARIVVGKDGKVYEQ

Sequences:

>Translated_952_residues
MIWSDFMAIIFNPNKKIFTLQTAHTTYQMQVDRLGYLLHLYYGAKSTCDMDYVLTYADRGFSGNPYAAGMNRTYSLDTLP
QEYPTLGTGDFRNIALDIKNEQGTESVELLYKSYEIRDGKYALKGLPAVWASDDEAQTLEIVLGDDIAGVEVHLLYGVLE
ACDVITRSVLIKNTGSGNITIEKAHAACLDMVYGDYDVIRFYGKHAMERNLERTHLGHGTLSFGSRRGTSSHQYNPAVIL
AQRDTTENAGDCYGMLFVYSGNFSCEAEKDQINQTRLLMGLSDELFSYPLAAGETFTVPEVIMSYSADGFSQLSHQYHTC
ISEHVCRSRFAHEVRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDGWFGKRDDDNSSLGDWFVNEKKLGGTL
SELIDRVHAQGVKFGIWIEPEMVNEDSNLYREHPDWAIQIPGKLPVRSRNQLILDFSRKEVRDNIFNQICAVFDQGKIDY
VKWDMNRSMADVYAGNLAYDYVLGVYDFMERLVTRYPDILLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAINRTRIQYGT
SFFYPVSSMGAHVSAVPNHQTGRVTSLKTRGITAMAGTFGYELNPALLSDEEKEEIREQIKTFKKYEMLINEGTYWRLTS
PFEDEVAAWMSVSRTKDRALVSVVRLYAEANAAACYVKLKGLESDAVYIEENTGRQYTGAALMNAGIPLPFAVKEYEAYQ
FSFIRLDEAKKLYDEIKKVCGNLKLNEADTADSASDNRIVISIYGGSGSGKTTIAAALQQYFLNDNTACYVLTGDNYPHR
IPMRNDEERLNVYNESGEDGLRGYLGTPKEIDFDRINKELSEFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWT
HGGSEYLKGVDIPVFLESSPEETKARRIKRGRDENAASPFICRVVELEQEKLDLQGKNARIVVGKDGKVYEQ
>Mature_952_residues
MIWSDFMAIIFNPNKKIFTLQTAHTTYQMQVDRLGYLLHLYYGAKSTCDMDYVLTYADRGFSGNPYAAGMNRTYSLDTLP
QEYPTLGTGDFRNIALDIKNEQGTESVELLYKSYEIRDGKYALKGLPAVWASDDEAQTLEIVLGDDIAGVEVHLLYGVLE
ACDVITRSVLIKNTGSGNITIEKAHAACLDMVYGDYDVIRFYGKHAMERNLERTHLGHGTLSFGSRRGTSSHQYNPAVIL
AQRDTTENAGDCYGMLFVYSGNFSCEAEKDQINQTRLLMGLSDELFSYPLAAGETFTVPEVIMSYSADGFSQLSHQYHTC
ISEHVCRSRFAHEVRPVLINSWEAAYFDFTGDTIVDLAKEAASLGIDMVVMDDGWFGKRDDDNSSLGDWFVNEKKLGGTL
SELIDRVHAQGVKFGIWIEPEMVNEDSNLYREHPDWAIQIPGKLPVRSRNQLILDFSRKEVRDNIFNQICAVFDQGKIDY
VKWDMNRSMADVYAGNLAYDYVLGVYDFMERLVTRYPDILLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAINRTRIQYGT
SFFYPVSSMGAHVSAVPNHQTGRVTSLKTRGITAMAGTFGYELNPALLSDEEKEEIREQIKTFKKYEMLINEGTYWRLTS
PFEDEVAAWMSVSRTKDRALVSVVRLYAEANAAACYVKLKGLESDAVYIEENTGRQYTGAALMNAGIPLPFAVKEYEAYQ
FSFIRLDEAKKLYDEIKKVCGNLKLNEADTADSASDNRIVISIYGGSGSGKTTIAAALQQYFLNDNTACYVLTGDNYPHR
IPMRNDEERLNVYNESGEDGLRGYLGTPKEIDFDRINKELSEFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWT
HGGSEYLKGVDIPVFLESSPEETKARRIKRGRDENAASPFICRVVELEQEKLDLQGKNARIVVGKDGKVYEQ

Specific function: Alpha-galactosidase associated with the raffinose operon [H]

COG id: COG3345

COG function: function code G; Alpha-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 36 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR002252
- InterPro:   IPR017853
- InterPro:   IPR000111 [H]

Pfam domain/function: PF02065 Melibiase [H]

EC number: =3.2.1.22 [H]

Molecular weight: Translated: 107176; Mature: 107176

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00512 ALPHA_GALACTOSIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWSDFMAIIFNPNKKIFTLQTAHTTYQMQVDRLGYLLHLYYGAKSTCDMDYVLTYADRG
CCCCCEEEEEECCCCEEEEEEECCCEEEEEHHHHCEEEEEEECCCCCCCCEEEEEEECCC
FSGNPYAAGMNRTYSLDTLPQEYPTLGTGDFRNIALDIKNEQGTESVELLYKSYEIRDGK
CCCCCCCCCCCCEEECCCCCHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
YALKGLPAVWASDDEAQTLEIVLGDDIAGVEVHLLYGVLEACDVITRSVLIKNTGSGNIT
EEECCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCEE
IEKAHAACLDMVYGDYDVIRFYGKHAMERNLERTHLGHGTLSFGSRRGTSSHQYNPAVIL
EEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
AQRDTTENAGDCYGMLFVYSGNFSCEAEKDQINQTRLLMGLSDELFSYPLAAGETFTVPE
EECCCCCCCCCEEEEEEEEECCCEECCCHHHCCHHHEEECCCHHHHHCCCCCCCCCCHHH
VIMSYSADGFSQLSHQYHTCISEHVCRSRFAHEVRPVLINSWEAAYFDFTGDTIVDLAKE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHHHH
AASLGIDMVVMDDGWFGKRDDDNSSLGDWFVNEKKLGGTLSELIDRVHAQGVKFGIWIEP
HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCEEEEEEECC
EMVNEDSNLYREHPDWAIQIPGKLPVRSRNQLILDFSRKEVRDNIFNQICAVFDQGKIDY
CEECCCCHHHHCCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEE
VKWDMNRSMADVYAGNLAYDYVLGVYDFMERLVTRYPDILLEGCSGGGGRFDAGMLYYSP
EEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCEEEECC
QIWCSDNTDAINRTRIQYGTSFFYPVSSMGAHVSAVPNHQTGRVTSLKTRGITAMAGTFG
EEEECCCCCCCCCEEEEECCEEEEEHHHCCCEEEECCCCCCCCEEEEEECCEEEEECCCC
YELNPALLSDEEKEEIREQIKTFKKYEMLINEGTYWRLTSPFEDEVAAWMSVSRTKDRAL
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
VSVVRLYAEANAAACYVKLKGLESDAVYIEENTGRQYTGAALMNAGIPLPFAVKEYEAYQ
HHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCEEECHHHHHCCCCCCEEEECCCCEE
FSFIRLDEAKKLYDEIKKVCGNLKLNEADTADSASDNRIVISIYGGSGSGKTTIAAALQQ
EEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
YFLNDNTACYVLTGDNYPHRIPMRNDEERLNVYNESGEDGLRGYLGTPKEIDFDRINKEL
HHCCCCCEEEEEECCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
SEFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWTHGGSEYLKGVDIPVFLESSP
HHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCEEEECCCC
EETKARRIKRGRDENAASPFICRVVELEQEKLDLQGKNARIVVGKDGKVYEQ
CHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MIWSDFMAIIFNPNKKIFTLQTAHTTYQMQVDRLGYLLHLYYGAKSTCDMDYVLTYADRG
CCCCCEEEEEECCCCEEEEEEECCCEEEEEHHHHCEEEEEEECCCCCCCCEEEEEEECCC
FSGNPYAAGMNRTYSLDTLPQEYPTLGTGDFRNIALDIKNEQGTESVELLYKSYEIRDGK
CCCCCCCCCCCCEEECCCCCHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC
YALKGLPAVWASDDEAQTLEIVLGDDIAGVEVHLLYGVLEACDVITRSVLIKNTGSGNIT
EEECCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCEE
IEKAHAACLDMVYGDYDVIRFYGKHAMERNLERTHLGHGTLSFGSRRGTSSHQYNPAVIL
EEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
AQRDTTENAGDCYGMLFVYSGNFSCEAEKDQINQTRLLMGLSDELFSYPLAAGETFTVPE
EECCCCCCCCCEEEEEEEEECCCEECCCHHHCCHHHEEECCCHHHHHCCCCCCCCCCHHH
VIMSYSADGFSQLSHQYHTCISEHVCRSRFAHEVRPVLINSWEAAYFDFTGDTIVDLAKE
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHHHH
AASLGIDMVVMDDGWFGKRDDDNSSLGDWFVNEKKLGGTLSELIDRVHAQGVKFGIWIEP
HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCEEEEEEECC
EMVNEDSNLYREHPDWAIQIPGKLPVRSRNQLILDFSRKEVRDNIFNQICAVFDQGKIDY
CEECCCCHHHHCCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEE
VKWDMNRSMADVYAGNLAYDYVLGVYDFMERLVTRYPDILLEGCSGGGGRFDAGMLYYSP
EEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCEEEECC
QIWCSDNTDAINRTRIQYGTSFFYPVSSMGAHVSAVPNHQTGRVTSLKTRGITAMAGTFG
EEEECCCCCCCCCEEEEECCEEEEEHHHCCCEEEECCCCCCCCEEEEEECCEEEEECCCC
YELNPALLSDEEKEEIREQIKTFKKYEMLINEGTYWRLTSPFEDEVAAWMSVSRTKDRAL
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
VSVVRLYAEANAAACYVKLKGLESDAVYIEENTGRQYTGAALMNAGIPLPFAVKEYEAYQ
HHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCCEEECHHHHHCCCCCCEEEECCCCEE
FSFIRLDEAKKLYDEIKKVCGNLKLNEADTADSASDNRIVISIYGGSGSGKTTIAAALQQ
EEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
YFLNDNTACYVLTGDNYPHRIPMRNDEERLNVYNESGEDGLRGYLGTPKEIDFDRINKEL
HHCCCCCEEEEEECCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
SEFKAGKDIIEIKHMGREDGDISYDETDFTGIKVLILEWTHGGSEYLKGVDIPVFLESSP
HHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHCCCCCEEEECCCC
EETKARRIKRGRDENAASPFICRVVELEQEKLDLQGKNARIVVGKDGKVYEQ
CHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA