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The map label for this gene is amyC [H]

Identifier: 238922673

GI number: 238922673

Start: 230370

End: 231281

Strand: Direct

Name: amyC [H]

Synonym: EUBREC_0248

Alternate gene names: 238922673

Gene position: 230370-231281 (Clockwise)

Preceding gene: 238922672

Following gene: 238922674

Centisome position: 6.68

GC content: 39.47

Gene sequence:

>912_bases
ATGGCAAAACAGAAAAAAACGCAGGAAGTCAGTGCCGTAAGACAGGCCAAGCACGGTTGGATAATCACATTATTATTCAC
TGTTTTATCAGTACTTTGGATTTCACCAATCTTTATGGTGTTACTCAATTCATTTAAGAGAAAAGCCTACATATTCAAGC
ATCCGTTTGGAATCAGCACAGTATCTATCACTGAGGGCTTTGAAGCCTTCAAGGATGGTATGTCAAGGCTTTTCTGTAGC
ACATTAAACTACAAGAATGGTCTCAGAATGACACATTTCTGGGACTGCTTTGGAAATTCACTTTTCATCACAGTCGGCTC
AGTAGTACTTATTGTACTCTGCTGCTCAATGTGTGCATGGTACATAGTTCGTGTAAAGACTAAGGGCACAAAGCTTATGT
ATACACTTTGCCTTTTCTCTATGATTGTACCATTCCAGATGGTAATGTTTACATTATCAAAATTTGCAAATATGCTTCAT
TTATCAAATCCACTCGGTATCATCATTGTATATCTTGGCTTTGGAGCAGGACTTGCTGTGTTTATGTTTACAGGATTTGT
AAAGAGTATCTCATTAGAGATCGAAGAGGCAGCTATGATTGATGGCTGTACACCATTACAGATGTATTTCAGGGTTGTAT
TTCCAATACTTCGTCCTACAGCGGTAACAGTAGCGATACTTGAGGCAATGTGGGTATGGAATGATTACCTTCTTCCATCA
CTGGTTTTAAACATCAACCAGTACAAAACCATACCAATTGCTATTCAGTACTTAAAGCAGAGCCACGGTATGATTGACTG
GGGTGCAATGATGGCCATGCTCGTGCTTGCGATTCTGCCAATTGTTATCTTCTATATTGTATGTCAGAAGTACATTATAG
AGGGTGTGCTCGCAGGAGCTGTAAAGGGTTAA

Upstream 100 bases:

>100_bases
AGGGCGTAGGCCAGGCAAAGGCTGTTATATTCTTTATAATTGTTGCAATTATCGCACTTGCACAGAATAAGATTACTACA
AGCAAGGAGGTACAGGACTA

Downstream 100 bases:

>100_bases
TATAGCTTACAAGAGGATATAGTTTATGTTATTTTAAGCCCCACACTTGTTAAGAAAACATGTGGGGCTTAAGCTAAATT
AGCAGGTTTTGTAGTTGTGG

Product: permease of ABC transporter possibly for oligosaccharides

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAKQKKTQEVSAVRQAKHGWIITLLFTVLSVLWISPIFMVLLNSFKRKAYIFKHPFGISTVSITEGFEAFKDGMSRLFCS
TLNYKNGLRMTHFWDCFGNSLFITVGSVVLIVLCCSMCAWYIVRVKTKGTKLMYTLCLFSMIVPFQMVMFTLSKFANMLH
LSNPLGIIIVYLGFGAGLAVFMFTGFVKSISLEIEEAAMIDGCTPLQMYFRVVFPILRPTAVTVAILEAMWVWNDYLLPS
LVLNINQYKTIPIAIQYLKQSHGMIDWGAMMAMLVLAILPIVIFYIVCQKYIIEGVLAGAVKG

Sequences:

>Translated_303_residues
MAKQKKTQEVSAVRQAKHGWIITLLFTVLSVLWISPIFMVLLNSFKRKAYIFKHPFGISTVSITEGFEAFKDGMSRLFCS
TLNYKNGLRMTHFWDCFGNSLFITVGSVVLIVLCCSMCAWYIVRVKTKGTKLMYTLCLFSMIVPFQMVMFTLSKFANMLH
LSNPLGIIIVYLGFGAGLAVFMFTGFVKSISLEIEEAAMIDGCTPLQMYFRVVFPILRPTAVTVAILEAMWVWNDYLLPS
LVLNINQYKTIPIAIQYLKQSHGMIDWGAMMAMLVLAILPIVIFYIVCQKYIIEGVLAGAVKG
>Mature_302_residues
AKQKKTQEVSAVRQAKHGWIITLLFTVLSVLWISPIFMVLLNSFKRKAYIFKHPFGISTVSITEGFEAFKDGMSRLFCST
LNYKNGLRMTHFWDCFGNSLFITVGSVVLIVLCCSMCAWYIVRVKTKGTKLMYTLCLFSMIVPFQMVMFTLSKFANMLHL
SNPLGIIIVYLGFGAGLAVFMFTGFVKSISLEIEEAAMIDGCTPLQMYFRVVFPILRPTAVTVAILEAMWVWNDYLLPSL
VLNINQYKTIPIAIQYLKQSHGMIDWGAMMAMLVLAILPIVIFYIVCQKYIIEGVLAGAVKG

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=218, Percent_Identity=33.0275229357798, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=29.5774647887324, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789860, Length=214, Percent_Identity=24.7663551401869, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34197; Mature: 34066

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKKTQEVSAVRQAKHGWIITLLFTVLSVLWISPIFMVLLNSFKRKAYIFKHPFGIST
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCE
VSITEGFEAFKDGMSRLFCSTLNYKNGLRMTHFWDCFGNSLFITVGSVVLIVLCCSMCAW
EEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YIVRVKTKGTKLMYTLCLFSMIVPFQMVMFTLSKFANMLHLSNPLGIIIVYLGFGAGLAV
HHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FMFTGFVKSISLEIEEAAMIDGCTPLQMYFRVVFPILRPTAVTVAILEAMWVWNDYLLPS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLNINQYKTIPIAIQYLKQSHGMIDWGAMMAMLVLAILPIVIFYIVCQKYIIEGVLAGA
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VKG
CCC
>Mature Secondary Structure 
AKQKKTQEVSAVRQAKHGWIITLLFTVLSVLWISPIFMVLLNSFKRKAYIFKHPFGIST
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCE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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]