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The map label for this gene is amyD [H]

Identifier: 238922672

GI number: 238922672

Start: 229513

End: 230370

Strand: Direct

Name: amyD [H]

Synonym: EUBREC_0247

Alternate gene names: 238922672

Gene position: 229513-230370 (Clockwise)

Preceding gene: 238922671

Following gene: 238922673

Centisome position: 6.65

GC content: 39.98

Gene sequence:

>858_bases
ATGGAAAAGTCGATTAGAAAAAAATTTTGGATCTTCGCTTTACCGACAATGGCAGCATTTACAATAGGATTTATTGTACC
GTTCGTATATGGTATCTTCCTTTCATTTTGTAAATTCTCCACTGTTACAGACTGGAAATGGGTGGGATTTAAAAATTACA
CAAGGATTTTTGTTGTAAACGGCAGTGTGGATACAACCTTTATTCATTCAATCTGGTACACAGCACTATTTACAGTAGTT
TCGGTACTGATTATCAATATCGTATCATTTGCAATAGCAATGGCGCTTACAAAAGGAATCAGAGGAACAAATCTTTTCCG
TACAGTATTCTTCCTTCCAAACCTGATCGGTGGAATCGTACTCTCATATGTATGGTTGATGATTTTTAACTCTATCCTGC
AGAACTATTCAAAGACAATCGTAAGCTCAGAGTGGTCAGCATTCTGGGGACTTATCGCAGTAGTATGCTGGCAGCAGATT
GGATATATGATGATTATCTACATCGCAGGTATTCAGAATATACCGGGTGAGCTTATTGAGGCAGCAAAGATTGATGGAGC
CAACAGATGGCAGCTCTTAAAGAGCGTTATTCTTCCAATGCTTATGCCGACAATCACAATCTGTACATTCCTGACACTGA
CAAACGGCTTCAAGCTGTTCGACCAGAACTTAGCTCTTACAGGCGGTAATCCGGGAAAGATGTCAGAGCTGCTTGCCTTA
AATATCTACAACACCATGTATGGAACAACAGGATGGCAGGGCGTAGGCCAGGCAAAGGCTGTTATATTCTTTATAATTGT
TGCAATTATCGCACTTGCACAGAATAAGATTACTACAAGCAAGGAGGTACAGGACTAA

Upstream 100 bases:

>100_bases
GAACGAGCAGTAAAATTCTCTAAAAGTTAGTAAAAAGTAGTAAAAGTGGGGTGAGTGGCAGTCACTCACCCCATATTTTT
TTAAGAAAGGTATATTTGTT

Downstream 100 bases:

>100_bases
TGGCAAAACAGAAAAAAACGCAGGAAGTCAGTGCCGTAAGACAGGCCAAGCACGGTTGGATAATCACATTATTATTCACT
GTTTTATCAGTACTTTGGAT

Product: permease of ABC transporter possibly for oligosaccharides

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MEKSIRKKFWIFALPTMAAFTIGFIVPFVYGIFLSFCKFSTVTDWKWVGFKNYTRIFVVNGSVDTTFIHSIWYTALFTVV
SVLIINIVSFAIAMALTKGIRGTNLFRTVFFLPNLIGGIVLSYVWLMIFNSILQNYSKTIVSSEWSAFWGLIAVVCWQQI
GYMMIIYIAGIQNIPGELIEAAKIDGANRWQLLKSVILPMLMPTITICTFLTLTNGFKLFDQNLALTGGNPGKMSELLAL
NIYNTMYGTTGWQGVGQAKAVIFFIIVAIIALAQNKITTSKEVQD

Sequences:

>Translated_285_residues
MEKSIRKKFWIFALPTMAAFTIGFIVPFVYGIFLSFCKFSTVTDWKWVGFKNYTRIFVVNGSVDTTFIHSIWYTALFTVV
SVLIINIVSFAIAMALTKGIRGTNLFRTVFFLPNLIGGIVLSYVWLMIFNSILQNYSKTIVSSEWSAFWGLIAVVCWQQI
GYMMIIYIAGIQNIPGELIEAAKIDGANRWQLLKSVILPMLMPTITICTFLTLTNGFKLFDQNLALTGGNPGKMSELLAL
NIYNTMYGTTGWQGVGQAKAVIFFIIVAIIALAQNKITTSKEVQD
>Mature_285_residues
MEKSIRKKFWIFALPTMAAFTIGFIVPFVYGIFLSFCKFSTVTDWKWVGFKNYTRIFVVNGSVDTTFIHSIWYTALFTVV
SVLIINIVSFAIAMALTKGIRGTNLFRTVFFLPNLIGGIVLSYVWLMIFNSILQNYSKTIVSSEWSAFWGLIAVVCWQQI
GYMMIIYIAGIQNIPGELIEAAKIDGANRWQLLKSVILPMLMPTITICTFLTLTNGFKLFDQNLALTGGNPGKMSELLAL
NIYNTMYGTTGWQGVGQAKAVIFFIIVAIIALAQNKITTSKEVQD

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=266, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789861, Length=250, Percent_Identity=26, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790465, Length=259, Percent_Identity=26.2548262548263, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31968; Mature: 31968

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSIRKKFWIFALPTMAAFTIGFIVPFVYGIFLSFCKFSTVTDWKWVGFKNYTRIFVVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEE
GSVDTTFIHSIWYTALFTVVSVLIINIVSFAIAMALTKGIRGTNLFRTVFFLPNLIGGIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSYVWLMIFNSILQNYSKTIVSSEWSAFWGLIAVVCWQQIGYMMIIYIAGIQNIPGELIE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AAKIDGANRWQLLKSVILPMLMPTITICTFLTLTNGFKLFDQNLALTGGNPGKMSELLAL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCHHHHHHHHH
NIYNTMYGTTGWQGVGQAKAVIFFIIVAIIALAQNKITTSKEVQD
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEKSIRKKFWIFALPTMAAFTIGFIVPFVYGIFLSFCKFSTVTDWKWVGFKNYTRIFVVN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEE
GSVDTTFIHSIWYTALFTVVSVLIINIVSFAIAMALTKGIRGTNLFRTVFFLPNLIGGIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSYVWLMIFNSILQNYSKTIVSSEWSAFWGLIAVVCWQQIGYMMIIYIAGIQNIPGELIE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AAKIDGANRWQLLKSVILPMLMPTITICTFLTLTNGFKLFDQNLALTGGNPGKMSELLAL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCHHHHHHHHH
NIYNTMYGTTGWQGVGQAKAVIFFIIVAIIALAQNKITTSKEVQD
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]