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The map label for this gene is def [H]

Identifier: 238922278

GI number: 238922278

Start: 474736

End: 475146

Strand: Reverse

Name: def [H]

Synonym: EUBELI_20514

Alternate gene names: 238922278

Gene position: 475146-474736 (Counterclockwise)

Preceding gene: 238922279

Following gene: 238922277

Centisome position: 75.81

GC content: 39.66

Gene sequence:

>411_bases
ATGGTAAAGAAAATAGTGAAAGACCCATTCTTTCTGGCACAGAAATCAGTGGATGCAACAGAGTCGGATAAACAGGTGGT
TACAGATTTACTTGATACATTAATAGCCAATCTTGACCACTGTGTCGGGATGGCTGCTAATATGATTGGAGTCAAAAAGA
ATATTATTGTGGTGGCAGCAGGACCATTTCAGTTTCCAATGATTAACCCGGTAATAACTAATAAGTCAGGAGAATACCAG
ACGGAGGAAGGATGCCTGTCATTAGAAGGTGTGCGTCCATGTACGAGATATCAGGATATTGAAGTGGATTATCTTGACCA
GAATTTTAAGAAACAGCATAGAAAATACTCAGGTTGGACAGCGCAGATAATCCAGCATGAGATTGACCATTGTAATGGGG
TTGTAATATAA

Upstream 100 bases:

>100_bases
TTAAAAAACAAGACTAAGATAACAGACATATATAAAATAAACCTATAAGTGTTGTAAAAATGCGACTATTGATAGGTATC
ATAATAAGGAGAATCAGCTA

Downstream 100 bases:

>100_bases
GATAATTGTTATATAGGAAGGCAAATTGTACCCATCGTGTCCTTGACACGGGGTACAATTCTTAAAAATATCCAACAGAG
ATAATTTGAATATAGAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: PDF; Polypeptide deformylase [H]

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MVKKIVKDPFFLAQKSVDATESDKQVVTDLLDTLIANLDHCVGMAANMIGVKKNIIVVAAGPFQFPMINPVITNKSGEYQ
TEEGCLSLEGVRPCTRYQDIEVDYLDQNFKKQHRKYSGWTAQIIQHEIDHCNGVVI

Sequences:

>Translated_136_residues
MVKKIVKDPFFLAQKSVDATESDKQVVTDLLDTLIANLDHCVGMAANMIGVKKNIIVVAAGPFQFPMINPVITNKSGEYQ
TEEGCLSLEGVRPCTRYQDIEVDYLDQNFKKQHRKYSGWTAQIIQHEIDHCNGVVI
>Mature_136_residues
MVKKIVKDPFFLAQKSVDATESDKQVVTDLLDTLIANLDHCVGMAANMIGVKKNIIVVAAGPFQFPMINPVITNKSGEYQ
TEEGCLSLEGVRPCTRYQDIEVDYLDQNFKKQHRKYSGWTAQIIQHEIDHCNGVVI

Specific function: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions

COG id: COG0242

COG function: function code J; N-formylmethionyl-tRNA deformylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polypeptide deformylase family [H]

Homologues:

Organism=Escherichia coli, GI1789682, Length=114, Percent_Identity=32.4561403508772, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000181 [H]

Pfam domain/function: PF01327 Pep_deformylase [H]

EC number: =3.5.1.88 [H]

Molecular weight: Translated: 15269; Mature: 15269

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKIVKDPFFLAQKSVDATESDKQVVTDLLDTLIANLDHCVGMAANMIGVKKNIIVVAA
CCCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GPFQFPMINPVITNKSGEYQTEEGCLSLEGVRPCTRYQDIEVDYLDQNFKKQHRKYSGWT
CCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
AQIIQHEIDHCNGVVI
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVKKIVKDPFFLAQKSVDATESDKQVVTDLLDTLIANLDHCVGMAANMIGVKKNIIVVAA
CCCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
GPFQFPMINPVITNKSGEYQTEEGCLSLEGVRPCTRYQDIEVDYLDQNFKKQHRKYSGWT
CCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
AQIIQHEIDHCNGVVI
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9572951 [H]