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The map label for this gene is pocR [H]

Identifier: 238922186

GI number: 238922186

Start: 383291

End: 384076

Strand: Reverse

Name: pocR [H]

Synonym: EUBELI_20421

Alternate gene names: 238922186

Gene position: 384076-383291 (Counterclockwise)

Preceding gene: 238922187

Following gene: 238922185

Centisome position: 61.28

GC content: 39.19

Gene sequence:

>786_bases
ATGAAGATTCAAGATTTTGCTGATATGGAGAAATTTGAATCAATTATGTCTGACTGGGCTGTGGCAACAGGATTAGCTAC
GGTTGCAGTTGGAGCTGATGGGAAGTATATTTCCGAATGTTACAACTTTACAGATTTCTGTATGAAGCTTACCAGAGGAA
GTAAGGAAGGATGCAGAAGATGTGAAAAATGTGATGCTGAAGGACAAGGTGTATATCATTGCCATGCTGGACTTGTGGAT
TTTGGTATTCCGCTTAAGTTAAGCGATGGTACAGTGCTTGGCTCTGTAATCGGAGGTCAGGTTTTACCTGAGCATCCAGA
TGAAGAGAAATTCAGAGGCGTTGCAAGAGAACTGGGTATTAATGAGGATGAGTATATTGAGGCGTTAGGAAAAGTTACAG
TAAGAACAGAGACGGAGATTAATGCAGCAGCTAACCTGCTAGGAGCAGTACTTAATAATTTTATTAATTCAGAATATAAT
TCTAAGTACAATGGACAATTGATTACAAAGCTTACAGGTGGTGTTAAGAGCTGTGAAGAGTATGTGAGAGATATCAAGGA
GAATACCAAGCAGCTTGATGGCATACAGAGAAAGCAGAATATTCTTGCACTTAATGCATCTATTGAGGCTGCAAGAGCCG
GTGAGGCGGGAAAAGGCTTTTCAGTTGTAGCATTAGAGGTAGGAAAGCTTGCTAAGAGCTGTACAGATCTTAATAACAGA
ATAACCTCAACAGTAGAAAATATATCTGATGTTATACATGATATGGCAGATATAGGTAATAGATAA

Upstream 100 bases:

>100_bases
AAATGTTGCTAATTACTCATATTCATTGACTTTAGAGGTCTTATTTGTTAAAATTTATTCAATCAATACATGTAACAATT
GAAAAAGAGGTGGTTTAAGC

Downstream 100 bases:

>100_bases
AGAATATCAGCGGGTAATTACATATAGCGAATGTCAACTGGAAGATGCAACTTGTTGACATTCGCTATTTTCAGTTCTAT
AATCAAATAAAAATTTTAAA

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKIQDFADMEKFESIMSDWAVATGLATVAVGADGKYISECYNFTDFCMKLTRGSKEGCRRCEKCDAEGQGVYHCHAGLVD
FGIPLKLSDGTVLGSVIGGQVLPEHPDEEKFRGVARELGINEDEYIEALGKVTVRTETEINAAANLLGAVLNNFINSEYN
SKYNGQLITKLTGGVKSCEEYVRDIKENTKQLDGIQRKQNILALNASIEAARAGEAGKGFSVVALEVGKLAKSCTDLNNR
ITSTVENISDVIHDMADIGNR

Sequences:

>Translated_261_residues
MKIQDFADMEKFESIMSDWAVATGLATVAVGADGKYISECYNFTDFCMKLTRGSKEGCRRCEKCDAEGQGVYHCHAGLVD
FGIPLKLSDGTVLGSVIGGQVLPEHPDEEKFRGVARELGINEDEYIEALGKVTVRTETEINAAANLLGAVLNNFINSEYN
SKYNGQLITKLTGGVKSCEEYVRDIKENTKQLDGIQRKQNILALNASIEAARAGEAGKGFSVVALEVGKLAKSCTDLNNR
ITSTVENISDVIHDMADIGNR
>Mature_261_residues
MKIQDFADMEKFESIMSDWAVATGLATVAVGADGKYISECYNFTDFCMKLTRGSKEGCRRCEKCDAEGQGVYHCHAGLVD
FGIPLKLSDGTVLGSVIGGQVLPEHPDEEKFRGVARELGINEDEYIEALGKVTVRTETEINAAANLLGAVLNNFINSEYN
SKYNGQLITKLTGGVKSCEEYVRDIKENTKQLDGIQRKQNILALNASIEAARAGEAGKGFSVVALEVGKLAKSCTDLNNR
ITSTVENISDVIHDMADIGNR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4936

COG function: function code TK; Predicted sensor domain

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28340; Mature: 28340

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQDFADMEKFESIMSDWAVATGLATVAVGADGKYISECYNFTDFCMKLTRGSKEGCRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
CEKCDAEGQGVYHCHAGLVDFGIPLKLSDGTVLGSVIGGQVLPEHPDEEKFRGVARELGI
HHHCCCCCCCEEEEECCHHHCCCCEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC
NEDEYIEALGKVTVRTETEINAAANLLGAVLNNFINSEYNSKYNGQLITKLTGGVKSCEE
CHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHH
YVRDIKENTKQLDGIQRKQNILALNASIEAARAGEAGKGFSVVALEVGKLAKSCTDLNNR
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH
ITSTVENISDVIHDMADIGNR
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIQDFADMEKFESIMSDWAVATGLATVAVGADGKYISECYNFTDFCMKLTRGSKEGCRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
CEKCDAEGQGVYHCHAGLVDFGIPLKLSDGTVLGSVIGGQVLPEHPDEEKFRGVARELGI
HHHCCCCCCCEEEEECCHHHCCCCEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC
NEDEYIEALGKVTVRTETEINAAANLLGAVLNNFINSEYNSKYNGQLITKLTGGVKSCEE
CHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHH
YVRDIKENTKQLDGIQRKQNILALNASIEAARAGEAGKGFSVVALEVGKLAKSCTDLNNR
HHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHH
ITSTVENISDVIHDMADIGNR
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]