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The map label for this gene is nifU [H]

Identifier: 238921894

GI number: 238921894

Start: 103572

End: 104012

Strand: Reverse

Name: nifU [H]

Synonym: EUBELI_20128

Alternate gene names: 238921894

Gene position: 104012-103572 (Counterclockwise)

Preceding gene: 238921895

Following gene: 238921893

Centisome position: 16.6

GC content: 39.23

Gene sequence:

>441_bases
ATGGAGACTAAAACTTTTTATAATGAGGTTCTTACGGATCATAACATGCATCCATATCATAAGCATGATATAGACAATGC
AGACTTAGAGCTTGAGGGTGTTAATCCAAGCTGTGGAGACGACATTATCTTAAAGCTTAAGTTTGATGATGCTAAGAAAA
CTATTGTTGATGGGGCATTTACAGGAGATGGTTGCGCAATATCGCAGGCATCAGCAGATATAATGCTTGAGCTTATCATT
GGAAAGCCTATTGATGAGGCTGTACATCTTTCAGAACTTTTCCTTAAGATGATTAAGGATGAGGCAACTGAGGAAGAGAT
TGATGAGCTTGATGAAGCCGGAGCATTAAGAGATATCTCTCATATGCCAGCAAGAGTTAAATGTGCAGTACTTGGCTGGC
ACACAATGGAAGAGATGGTAGAGAACCTTAAGAATGTTTAG

Upstream 100 bases:

>100_bases
GTTAATTCAACAACGAGAGCAAGCTTTGCTTTCTATAATACAGAAGAAGAAGTACAGCATTTTATAGAAGAACTATCTAA
GATCAGGGGGCTTATGGGAT

Downstream 100 bases:

>100_bases
AATGTAACCCAATCACTTATAATATGGTGATTGGGTTTTAATGTTTGTAGATAAGAATGGAGTAAATATGGAAAAGAAAT
TAGTTAAGCAGCAGCTTCTT

Product: nitrogen fixation protein NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
METKTFYNEVLTDHNMHPYHKHDIDNADLELEGVNPSCGDDIILKLKFDDAKKTIVDGAFTGDGCAISQASADIMLELII
GKPIDEAVHLSELFLKMIKDEATEEEIDELDEAGALRDISHMPARVKCAVLGWHTMEEMVENLKNV

Sequences:

>Translated_146_residues
METKTFYNEVLTDHNMHPYHKHDIDNADLELEGVNPSCGDDIILKLKFDDAKKTIVDGAFTGDGCAISQASADIMLELII
GKPIDEAVHLSELFLKMIKDEATEEEIDELDEAGALRDISHMPARVKCAVLGWHTMEEMVENLKNV
>Mature_146_residues
METKTFYNEVLTDHNMHPYHKHDIDNADLELEGVNPSCGDDIILKLKFDDAKKTIVDGAFTGDGCAISQASADIMLELII
GKPIDEAVHLSELFLKMIKDEATEEEIDELDEAGALRDISHMPARVKCAVLGWHTMEEMVENLKNV

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16326; Mature: 16326

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKTFYNEVLTDHNMHPYHKHDIDNADLELEGVNPSCGDDIILKLKFDDAKKTIVDGAF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCHHHHCCCCC
TGDGCAISQASADIMLELIIGKPIDEAVHLSELFLKMIKDEATEEEIDELDEAGALRDIS
CCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
HMPARVKCAVLGWHTMEEMVENLKNV
CCCCEEEEEEECHHHHHHHHHHHHCC
>Mature Secondary Structure
METKTFYNEVLTDHNMHPYHKHDIDNADLELEGVNPSCGDDIILKLKFDDAKKTIVDGAF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCHHHHCCCCC
TGDGCAISQASADIMLELIIGKPIDEAVHLSELFLKMIKDEATEEEIDELDEAGALRDIS
CCCCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHH
HMPARVKCAVLGWHTMEEMVENLKNV
CCCCEEEEEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]