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The map label for this gene is yieP [H]

Identifier: 238921720

GI number: 238921720

Start: 3765311

End: 3766003

Strand: Direct

Name: yieP [H]

Synonym: NT01EI_3889

Alternate gene names: 238921720

Gene position: 3765311-3766003 (Clockwise)

Preceding gene: 238921718

Following gene: 238921721

Centisome position: 98.77

GC content: 54.55

Gene sequence:

>693_bases
ATGCAACTAAATGCTCAACAACAAGCCGCCCAGCGCAATCTCTCCTATCTGCTTGCTGAGAAGATAGGCCAGCGGATCCT
GTCCGGCGAATATCCGTCCGGCAGCATTCTGCCGGGGGAACTCGAACTGGGTGAGATCTATGGCGTCAGTCGTACCGCCG
TACGTGAAGCGGTAAAAATGCTGGCGGCCAAAGGTATGCTGCTTCCACGTCCGCGCATCGGTACACGCGTCATGCCGAGC
AGTAGCTGGAACTTTCTCGATCAGGAGCTGCTGACTTGGTGGCTAACCCGAGAGAATTTTGAACACGTAAAAGATCACTT
CCTGGTACTGCGCAATGCGCTGGAGCCGCAGGCCTGTCTGCTAACGGCACTACACGCCAGCGACACTGATAAAGCCGCGA
TCAATAACCTGATGCACGAAATGCGCGAGCTCAATAGCCATTTTGATCGCGAGCGCTGGATTCGGGTCGATGTACAATTC
CACCAGCAAATCTACAAGGCCAGCGCTAACCCATTCCTGACCTCGTTCTCCAACTTGTTCAACTCGGTCTACCAAAGCTA
CTTCCGTTCGGTAACCGGCAATGAAGTCGTCAAGCTGGAGCAACACCAAGCGATCGTCGATGCTATTCTCGCTGGCGACG
CCCATGGAGCCTATGTGGCCTGTCAGGGCTTGCTGGGTATAGAGGGAGTCTAA

Upstream 100 bases:

>100_bases
AATATCGGACTCTTTTCATCCAACAGTACAGTGTGATCTGTTTTTTGTAGGATAAAATAGAGAAGTATAGATATGCATAC
CCTATTAGGATCAACTAGCC

Downstream 100 bases:

>100_bases
CACTCGACGGAAAATTTATGACCCAGATGGCTGGCTTGCCTTGGATTGCAGCAATGGCTTTTTTTTATGCAGGCGCTGGA
TGCCACTATCCTGAATACCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQLNAQQQAAQRNLSYLLAEKIGQRILSGEYPSGSILPGELELGEIYGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPS
SSWNFLDQELLTWWLTRENFEHVKDHFLVLRNALEPQACLLTALHASDTDKAAINNLMHEMRELNSHFDRERWIRVDVQF
HQQIYKASANPFLTSFSNLFNSVYQSYFRSVTGNEVVKLEQHQAIVDAILAGDAHGAYVACQGLLGIEGV

Sequences:

>Translated_230_residues
MQLNAQQQAAQRNLSYLLAEKIGQRILSGEYPSGSILPGELELGEIYGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPS
SSWNFLDQELLTWWLTRENFEHVKDHFLVLRNALEPQACLLTALHASDTDKAAINNLMHEMRELNSHFDRERWIRVDVQF
HQQIYKASANPFLTSFSNLFNSVYQSYFRSVTGNEVVKLEQHQAIVDAILAGDAHGAYVACQGLLGIEGV
>Mature_230_residues
MQLNAQQQAAQRNLSYLLAEKIGQRILSGEYPSGSILPGELELGEIYGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPS
SSWNFLDQELLTWWLTRENFEHVKDHFLVLRNALEPQACLLTALHASDTDKAAINNLMHEMRELNSHFDRERWIRVDVQF
HQQIYKASANPFLTSFSNLFNSVYQSYFRSVTGNEVVKLEQHQAIVDAILAGDAHGAYVACQGLLGIEGV

Specific function: Unknown

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=225, Percent_Identity=66.6666666666667, Blast_Score=319, Evalue=1e-88,
Organism=Escherichia coli, GI48994955, Length=209, Percent_Identity=30.1435406698565, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790032, Length=226, Percent_Identity=32.3008849557522, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786303, Length=218, Percent_Identity=30.2752293577982, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25940; Mature: 25940

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNAQQQAAQRNLSYLLAEKIGQRILSGEYPSGSILPGELELGEIYGVSRTAVREAVKM
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
LAAKGMLLPRPRIGTRVMPSSSWNFLDQELLTWWLTRENFEHVKDHFLVLRNALEPQACL
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LTALHASDTDKAAINNLMHEMRELNSHFDRERWIRVDVQFHQQIYKASANPFLTSFSNLF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHCCCHHHHHHHHHH
NSVYQSYFRSVTGNEVVKLEQHQAIVDAILAGDAHGAYVACQGLLGIEGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MQLNAQQQAAQRNLSYLLAEKIGQRILSGEYPSGSILPGELELGEIYGVSRTAVREAVKM
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHH
LAAKGMLLPRPRIGTRVMPSSSWNFLDQELLTWWLTRENFEHVKDHFLVLRNALEPQACL
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LTALHASDTDKAAINNLMHEMRELNSHFDRERWIRVDVQFHQQIYKASANPFLTSFSNLF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHCCCHHHHHHHHHH
NSVYQSYFRSVTGNEVVKLEQHQAIVDAILAGDAHGAYVACQGLLGIEGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]