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The map label for this gene is yhjK [H]

Identifier: 238921598

GI number: 238921598

Start: 3639586

End: 3641580

Strand: Reverse

Name: yhjK [H]

Synonym: NT01EI_3751

Alternate gene names: 238921598

Gene position: 3641580-3639586 (Counterclockwise)

Preceding gene: 238921599

Following gene: 238921597

Centisome position: 95.52

GC content: 59.3

Gene sequence:

>1995_bases
ATGGCGCTGGTCTCCTCGGTAGCGCTGGTGACCGTCTGTATCTTCACGGTAATTCAGCTGTTTCACTTTGTGCAGCAGCG
TAAGGATGACTATGGCCAGCAGCTGCAGAGTATTGCCCAGTCGGTGCGTCTGCCGCTGGCCGATGCGATGCTGAACATGG
ATGTCGTCAAGACCCAGCAGATCCTGGACGGCTTGCGGGCAAGTGGAATTCTCGCGCGGGCTGATATCGTATTACCTCAT
CATGAGGTACAGGTGCTGCGCGGTCACTTTCCCGCGGTGCGGCCCGTGCCGCGCTGGGCGGGCCGACTCTTCCATCTGCC
ACTGCAGCTCTCCACCCCGTTGTATGGCATAGATCGTGGCCGCGCGACGCCGGATCATCCGTTGGGTTACCTGATCCTGC
AGGTGGACTCATTCCGCCTGTACCGTTTTATTCTCACGACCTTTGCGACCATGGTGTCGACCTATCTGCTGTTGGCGTTG
ATCCTGACGGTGGCCATCAGCTGGTGCATGAACCGCCTGCTGGTGCATCCGCTGCGGGCGCTGGCTCGCGAGCTGCGCAA
CATGCCGCGGGAGGCGCCGCACTACCATCAGCTTCCTCAACTACCTCATCACGGCGATGATGAGCTGGGGCTCTTGGTTC
GTACCTATAACCGTAATCAGCAGGTGCTGGAGAAGACCCGCCAGACCATGAGTCAGTATTCCCAAACGAACCTTCCCAGT
CAGACGCTGTTTGTGTCGCTGCTTGAGCAGCAGAGCCAGGATGGGCATGAGGGACAGTGTGTAATGATGGTCAGCATCCC
GACCCTGCAGGAGGTGACGGGGGTATTGGACAGCGGGCAGCGCGATATGCTGTTGATGACGCTGGTAGAGCGCCTGCATG
AGGGGACTTCGCCGAACAGCCTGTTGGCGCAGGCGAGCCAGGATGGTTTTTTGATACTGGCGGGCGATGTGGCGCGCCCG
AGCGATGCCATGCAGCAGGCTCAGCGTCTGATGAGCCTCTTAACGCAGCCGGTGACTCTGGACAATCTGGCGCTGCGACC
AACGGCGGCTATCGGGATCGCGATGTGTCGACCGTCGCAGGAGATATCAGAGGAGGATCGCGGGCTTAGCCAGACGGAGC
GGTTGCTGATGCAGGCCCGCTCAGCGCTGAATATGGCGATGACGGACGGGAAGAATCGGGTATTGTTTTTTGAGCCCCAG
CTGGCTGAGCGTGTCAAGGCACGCTTAACCCAGCAGAATGAGATTCTGAACGCGCTGCGGCAGGGCGATTTTGAGCTGTA
CCTGCAGCCGCAGATTGATCTGCGCAGCCAGCGGCTGGCGGGGGCGGAGGCGCTGATCCGCTGGCACCGGCAGGACGGCG
GCTGCAGTGAGCCATCTCAGTTCATTCCGCTGGCCGAGGAGCAGGGCGGTATTGTGGCACTGGGCGAGTGGGTGCTGGAA
GAGGCGGTACGGATTTTGGTCGATTGGCAGCGACGGGGGTTGATGATACCGCTGTCGCTGAATGTCTCTGCGCTGCAGCT
GGCCGACGCCCGCTTTGGTCAACGCCTGGAGACCCTGCTGCTGCAGCATGCGATTGCAGCAGAGCATCTGCATCTGGAGA
TTACCGAAACCGCCTATATCAGCGATATTCACAGGGTGGCCGATACGCTGGATTGTCTGCGTAACCAGGGCGTGCGTGTG
GCGCTGGATGATTTCGGCATGGGGTATTCCGGGCTGAACTACCTGCGTCATTTGCCTGTCGATATTCTTAAAATTGATAA
AAGTTTTATCGATCAGATCCCACTGGACGGTGCGCTGGTGCGCATTGTCAGCTCGATTGCCGAGGTGCTTTCCCTGGAGG
TGGTTGCAGAAGGGGTGGAGACGCAGGGGCAGTGCGACTGGTTACTGGCTAACGGTATTCACTATGCACAGGGATACTTC
TTCTCACCGGCGCTGTCACAGCGCGATTTTCTGGCGAATTACCCGGTGGCCACTGTGGTGGTTCCCTCCATATAG

Upstream 100 bases:

>100_bases
TTGAGGCCTGCGGGCGCCGCCGACGCGGCAGCAGGCCGTCAGCAAATTTTGTGTGCGGAGAGAGAGTTTGCGAGTCAGTC
GTTCCTTAACCATAAAACAG

Downstream 100 bases:

>100_bases
CACCGACGATCTCTGCTAGCAATACGGATAATTCTTGCAGGGTCTTATGCGTTTCAGCTCATAGATTTGATTAAATAAAT
TTTATAATTGAAATGCCGCG

Product: biofilm formation regulator HmsP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 664; Mature: 663

Protein sequence:

>664_residues
MALVSSVALVTVCIFTVIQLFHFVQQRKDDYGQQLQSIAQSVRLPLADAMLNMDVVKTQQILDGLRASGILARADIVLPH
HEVQVLRGHFPAVRPVPRWAGRLFHLPLQLSTPLYGIDRGRATPDHPLGYLILQVDSFRLYRFILTTFATMVSTYLLLAL
ILTVAISWCMNRLLVHPLRALARELRNMPREAPHYHQLPQLPHHGDDELGLLVRTYNRNQQVLEKTRQTMSQYSQTNLPS
QTLFVSLLEQQSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVERLHEGTSPNSLLAQASQDGFLILAGDVARP
SDAMQQAQRLMSLLTQPVTLDNLALRPTAAIGIAMCRPSQEISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQ
LAERVKARLTQQNEILNALRQGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGIVALGEWVLE
EAVRILVDWQRRGLMIPLSLNVSALQLADARFGQRLETLLLQHAIAAEHLHLEITETAYISDIHRVADTLDCLRNQGVRV
ALDDFGMGYSGLNYLRHLPVDILKIDKSFIDQIPLDGALVRIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYF
FSPALSQRDFLANYPVATVVVPSI

Sequences:

>Translated_664_residues
MALVSSVALVTVCIFTVIQLFHFVQQRKDDYGQQLQSIAQSVRLPLADAMLNMDVVKTQQILDGLRASGILARADIVLPH
HEVQVLRGHFPAVRPVPRWAGRLFHLPLQLSTPLYGIDRGRATPDHPLGYLILQVDSFRLYRFILTTFATMVSTYLLLAL
ILTVAISWCMNRLLVHPLRALARELRNMPREAPHYHQLPQLPHHGDDELGLLVRTYNRNQQVLEKTRQTMSQYSQTNLPS
QTLFVSLLEQQSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVERLHEGTSPNSLLAQASQDGFLILAGDVARP
SDAMQQAQRLMSLLTQPVTLDNLALRPTAAIGIAMCRPSQEISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQ
LAERVKARLTQQNEILNALRQGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGIVALGEWVLE
EAVRILVDWQRRGLMIPLSLNVSALQLADARFGQRLETLLLQHAIAAEHLHLEITETAYISDIHRVADTLDCLRNQGVRV
ALDDFGMGYSGLNYLRHLPVDILKIDKSFIDQIPLDGALVRIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYF
FSPALSQRDFLANYPVATVVVPSI
>Mature_663_residues
ALVSSVALVTVCIFTVIQLFHFVQQRKDDYGQQLQSIAQSVRLPLADAMLNMDVVKTQQILDGLRASGILARADIVLPHH
EVQVLRGHFPAVRPVPRWAGRLFHLPLQLSTPLYGIDRGRATPDHPLGYLILQVDSFRLYRFILTTFATMVSTYLLLALI
LTVAISWCMNRLLVHPLRALARELRNMPREAPHYHQLPQLPHHGDDELGLLVRTYNRNQQVLEKTRQTMSQYSQTNLPSQ
TLFVSLLEQQSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVERLHEGTSPNSLLAQASQDGFLILAGDVARPS
DAMQQAQRLMSLLTQPVTLDNLALRPTAAIGIAMCRPSQEISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQL
AERVKARLTQQNEILNALRQGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGIVALGEWVLEE
AVRILVDWQRRGLMIPLSLNVSALQLADARFGQRLETLLLQHAIAAEHLHLEITETAYISDIHRVADTLDCLRNQGVRVA
LDDFGMGYSGLNYLRHLPVDILKIDKSFIDQIPLDGALVRIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYFF
SPALSQRDFLANYPVATVVVPSI

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=648, Percent_Identity=42.2839506172839, Blast_Score=503, Evalue=1e-143,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=33.7962962962963, Blast_Score=205, Evalue=7e-54,
Organism=Escherichia coli, GI1787541, Length=439, Percent_Identity=27.7904328018223, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=36.1788617886179, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=36.1702127659575, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=34.4262295081967, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=36.6533864541833, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=273, Percent_Identity=34.0659340659341, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=389, Percent_Identity=26.2210796915167, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=31.6205533596838, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=30.1652892561983, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=34.0080971659919, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1789650, Length=664, Percent_Identity=21.6867469879518, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787410, Length=125, Percent_Identity=31.2, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00672 HAMP [H]

EC number: NA

Molecular weight: Translated: 74320; Mature: 74189

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVSSVALVTVCIFTVIQLFHFVQQRKDDYGQQLQSIAQSVRLPLADAMLNMDVVKTQQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ILDGLRASGILARADIVLPHHEVQVLRGHFPAVRPVPRWAGRLFHLPLQLSTPLYGIDRG
HHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHCCHHEECCEEECCCCEECCCC
RATPDHPLGYLILQVDSFRLYRFILTTFATMVSTYLLLALILTVAISWCMNRLLVHPLRA
CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARELRNMPREAPHYHQLPQLPHHGDDELGLLVRTYNRNQQVLEKTRQTMSQYSQTNLPS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
QTLFVSLLEQQSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVERLHEGTSPNS
HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHH
LLAQASQDGFLILAGDVARPSDAMQQAQRLMSLLTQPVTLDNLALRPTAAIGIAMCRPSQ
HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCH
EISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQLAERVKARLTQQNEILNALR
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGIVALGEWVLE
CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHH
EAVRILVDWQRRGLMIPLSLNVSALQLADARFGQRLETLLLQHAIAAEHLHLEITETAYI
HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHH
SDIHRVADTLDCLRNQGVRVALDDFGMGYSGLNYLRHLPVDILKIDKSFIDQIPLDGALV
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHCHHHHHHCCCCHHHH
RIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYFFSPALSQRDFLANYPVATVV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEECCCCCCCCHHHCCCEEEEE
VPSI
ECCC
>Mature Secondary Structure 
ALVSSVALVTVCIFTVIQLFHFVQQRKDDYGQQLQSIAQSVRLPLADAMLNMDVVKTQQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ILDGLRASGILARADIVLPHHEVQVLRGHFPAVRPVPRWAGRLFHLPLQLSTPLYGIDRG
HHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHCCHHEECCEEECCCCEECCCC
RATPDHPLGYLILQVDSFRLYRFILTTFATMVSTYLLLALILTVAISWCMNRLLVHPLRA
CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARELRNMPREAPHYHQLPQLPHHGDDELGLLVRTYNRNQQVLEKTRQTMSQYSQTNLPS
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
QTLFVSLLEQQSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVERLHEGTSPNS
HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHH
LLAQASQDGFLILAGDVARPSDAMQQAQRLMSLLTQPVTLDNLALRPTAAIGIAMCRPSQ
HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCH
EISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQLAERVKARLTQQNEILNALR
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGIVALGEWVLE
CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHH
EAVRILVDWQRRGLMIPLSLNVSALQLADARFGQRLETLLLQHAIAAEHLHLEITETAYI
HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHH
SDIHRVADTLDCLRNQGVRVALDDFGMGYSGLNYLRHLPVDILKIDKSFIDQIPLDGALV
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHCHHHHHHCCCCHHHH
RIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYFFSPALSQRDFLANYPVATVV
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCEEECCCCCCCCHHHCCCEEEEE
VPSI
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 10493123 [H]