Click here to switch to the map view.

The map label for this gene is yhjJ [H]

Identifier: 238921596

GI number: 238921596

Start: 3636261

End: 3637793

Strand: Reverse

Name: yhjJ [H]

Synonym: NT01EI_3749

Alternate gene names: 238921596

Gene position: 3637793-3636261 (Counterclockwise)

Preceding gene: 238921597

Following gene: 238921594

Centisome position: 95.42

GC content: 61.12

Gene sequence:

>1533_bases
ATGCAATACACCAAATTGCGTCTGATGGTTGGTGGGCTGGCGCTGGCCATGGCCGGTACCTGCGTGCATTCTGAAACGCT
ACAACCCGACCCTGCCTGGCAGGAGGGCAAGCTGTCGAATGGTCTTTCCTGGCAGATACTGGCTACACCGCAGCGTCCGT
CCGATCGCATTGAGTTGCGTATGATCGTCAACACCGGCTCGCTGTCGGAGTCTCCTCAGCAGATGGGGTATGCCCACCTG
TTGCCGCGCCTGGCTCTGGCGCAGGGCAAGGGGCTTGATGCGCCCGCACTGCAGTCGTTCTGGCAGCAGGCAATCGATCC
CGCCCGCCCGATGCCGACAGCGATCACCTCGTACGACTACACCAGCTATAACCTGAGTCTGCCCAATAACCGCCCCGATC
TGATGAAGGATGCCCTGCGCTGGCTGGCCAATACTGCCGGCGATCTGCAGGTGAATGCCGAGACGGTCGGTGAGGCGCTG
AAAGGTGCCGACAGCCGTGTGATGGCGCAGCCCGGCGAGGCTGGCGATCCCTGGTGGCGCTACCGTCTGAAGGGATCCAA
CCTATTGGGCCATGAGCCCGGACGGGCAGCGGTGGTTCCACTGGCGCCGACGCAGCTGAAGGCCTTTTATCATCAGTGGT
ATACCCCTGATGCGATAACACTGTATGTGGTTGGCAACGTGGATGCCCGGGCGCTGAGTGAACAGATTAATCAAACCTTC
GGCTCCCTGAGCGGCCAGCGGGAGACGCCTGCCACCGTGCCGGCGTTGCCGGCGCTGGCCGCGGCACCGGTGAGCCTGAT
CGCCGATGGTACCCAGCAGGATATCCTGTCGCTGGTCTGGGATACACCGTGGCAGCCGATCCGCGACTCCCAGATGTTGC
TACGCTATTGGCGTAGCGACTTAGCGCGCGAGGCGCTGTTCTGGCATCTACAACAGGTGCTGGCCAACAGCGCGCTGAAA
GGCAGTGTGAACCTGAGCTTTAACTGCCAGGTGCAGTATCAGCGCTCGCAGTGTGCAATCCATTTAGAGACGGCCCAGGC
GTCATTGAGTAAGACGCTGGCGTTTATCGCCGATGAGATGTCCGCGCTGCGTGATGATGGGATTACCCAGACGGAGTTTG
ACACTCTGCTGGGGCAAAAGAACGATCAGCTGAGCCACCTGTTCGCCACCTATGCGCGGACCAATACCGAAATCCTGATG
AGTCAGCGTCTGCGCTCACAGCAAAGTGGTGTGGTGGATATCGCACCGGAGGCCTATCAGAAGCTGCGTCAGACGTTTCT
GAGCGCTCTGACGCTGGACGATATTAACCAGGAGCTGCATATCATGCTGTCGCGGGAACCTGCCGTGGTGCTGCGTCAGC
CGCGCGGCGAGGCAGAGGAGAACGTTGGCCGGCTGCTGGAGGAGTATAATCGGGTGATGGGGCTCGAGGGTGAAGAGGCC
GTCACCGCGGAGACGGTGGATACACCATCCCAGCCGGCCGCCGCTGAAAACCCGGCTCACGAAACTACGCCGTCTCAGCC
GCTGGCGCAGTAG

Upstream 100 bases:

>100_bases
TTTTTTTAAGCGTTTGCGACTTTGGCTGTTTTCTGTGGTCTAACGGAACAACACCTATATGCGTGGGTTACGCTTTTGTC
TGATTTGAGTAGGGGTTCAC

Downstream 100 bases:

>100_bases
GTACGTACGCTGCGACAGGTGCGACAGAACAACGCCGGCGTGAGCTGGCGTTGTTCTGTGTGGCCCACCGTGGATGGTTA
GGCGGGCATGACGTCGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MQYTKLRLMVGGLALAMAGTCVHSETLQPDPAWQEGKLSNGLSWQILATPQRPSDRIELRMIVNTGSLSESPQQMGYAHL
LPRLALAQGKGLDAPALQSFWQQAIDPARPMPTAITSYDYTSYNLSLPNNRPDLMKDALRWLANTAGDLQVNAETVGEAL
KGADSRVMAQPGEAGDPWWRYRLKGSNLLGHEPGRAAVVPLAPTQLKAFYHQWYTPDAITLYVVGNVDARALSEQINQTF
GSLSGQRETPATVPALPALAAAPVSLIADGTQQDILSLVWDTPWQPIRDSQMLLRYWRSDLAREALFWHLQQVLANSALK
GSVNLSFNCQVQYQRSQCAIHLETAQASLSKTLAFIADEMSALRDDGITQTEFDTLLGQKNDQLSHLFATYARTNTEILM
SQRLRSQQSGVVDIAPEAYQKLRQTFLSALTLDDINQELHIMLSREPAVVLRQPRGEAEENVGRLLEEYNRVMGLEGEEA
VTAETVDTPSQPAAAENPAHETTPSQPLAQ

Sequences:

>Translated_510_residues
MQYTKLRLMVGGLALAMAGTCVHSETLQPDPAWQEGKLSNGLSWQILATPQRPSDRIELRMIVNTGSLSESPQQMGYAHL
LPRLALAQGKGLDAPALQSFWQQAIDPARPMPTAITSYDYTSYNLSLPNNRPDLMKDALRWLANTAGDLQVNAETVGEAL
KGADSRVMAQPGEAGDPWWRYRLKGSNLLGHEPGRAAVVPLAPTQLKAFYHQWYTPDAITLYVVGNVDARALSEQINQTF
GSLSGQRETPATVPALPALAAAPVSLIADGTQQDILSLVWDTPWQPIRDSQMLLRYWRSDLAREALFWHLQQVLANSALK
GSVNLSFNCQVQYQRSQCAIHLETAQASLSKTLAFIADEMSALRDDGITQTEFDTLLGQKNDQLSHLFATYARTNTEILM
SQRLRSQQSGVVDIAPEAYQKLRQTFLSALTLDDINQELHIMLSREPAVVLRQPRGEAEENVGRLLEEYNRVMGLEGEEA
VTAETVDTPSQPAAAENPAHETTPSQPLAQ
>Mature_510_residues
MQYTKLRLMVGGLALAMAGTCVHSETLQPDPAWQEGKLSNGLSWQILATPQRPSDRIELRMIVNTGSLSESPQQMGYAHL
LPRLALAQGKGLDAPALQSFWQQAIDPARPMPTAITSYDYTSYNLSLPNNRPDLMKDALRWLANTAGDLQVNAETVGEAL
KGADSRVMAQPGEAGDPWWRYRLKGSNLLGHEPGRAAVVPLAPTQLKAFYHQWYTPDAITLYVVGNVDARALSEQINQTF
GSLSGQRETPATVPALPALAAAPVSLIADGTQQDILSLVWDTPWQPIRDSQMLLRYWRSDLAREALFWHLQQVLANSALK
GSVNLSFNCQVQYQRSQCAIHLETAQASLSKTLAFIADEMSALRDDGITQTEFDTLLGQKNDQLSHLFATYARTNTEILM
SQRLRSQQSGVVDIAPEAYQKLRQTFLSALTLDDINQELHIMLSREPAVVLRQPRGEAEENVGRLLEEYNRVMGLEGEEA
VTAETVDTPSQPAAAENPAHETTPSQPLAQ

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1789946, Length=474, Percent_Identity=55.0632911392405, Blast_Score=543, Evalue=1e-155,
Organism=Escherichia coli, GI1787770, Length=271, Percent_Identity=24.7232472324723, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 56248; Mature: 56248

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYTKLRLMVGGLALAMAGTCVHSETLQPDPAWQEGKLSNGLSWQILATPQRPSDRIELR
CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
MIVNTGSLSESPQQMGYAHLLPRLALAQGKGLDAPALQSFWQQAIDPARPMPTAITSYDY
EEEECCCCCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCC
TSYNLSLPNNRPDLMKDALRWLANTAGDLQVNAETVGEALKGADSRVMAQPGEAGDPWWR
CEEEEECCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCCCEE
YRLKGSNLLGHEPGRAAVVPLAPTQLKAFYHQWYTPDAITLYVVGNVDARALSEQINQTF
EEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHH
GSLSGQRETPATVPALPALAAAPVSLIADGTQQDILSLVWDTPWQPIRDSQMLLRYWRSD
HHCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LAREALFWHLQQVLANSALKGSVNLSFNCQVQYQRSQCAIHLETAQASLSKTLAFIADEM
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHH
SALRDDGITQTEFDTLLGQKNDQLSHLFATYARTNTEILMSQRLRSQQSGVVDIAPEAYQ
HHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHH
KLRQTFLSALTLDDINQELHIMLSREPAVVLRQPRGEAEENVGRLLEEYNRVMGLEGEEA
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
VTAETVDTPSQPAAAENPAHETTPSQPLAQ
EEEECCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQYTKLRLMVGGLALAMAGTCVHSETLQPDPAWQEGKLSNGLSWQILATPQRPSDRIELR
CCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
MIVNTGSLSESPQQMGYAHLLPRLALAQGKGLDAPALQSFWQQAIDPARPMPTAITSYDY
EEEECCCCCCCHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCC
TSYNLSLPNNRPDLMKDALRWLANTAGDLQVNAETVGEALKGADSRVMAQPGEAGDPWWR
CEEEEECCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCEEECCCCCCCCCEE
YRLKGSNLLGHEPGRAAVVPLAPTQLKAFYHQWYTPDAITLYVVGNVDARALSEQINQTF
EEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHH
GSLSGQRETPATVPALPALAAAPVSLIADGTQQDILSLVWDTPWQPIRDSQMLLRYWRSD
HHCCCCCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LAREALFWHLQQVLANSALKGSVNLSFNCQVQYQRSQCAIHLETAQASLSKTLAFIADEM
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHH
SALRDDGITQTEFDTLLGQKNDQLSHLFATYARTNTEILMSQRLRSQQSGVVDIAPEAYQ
HHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHH
KLRQTFLSALTLDDINQELHIMLSREPAVVLRQPRGEAEENVGRLLEEYNRVMGLEGEEA
HHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
VTAETVDTPSQPAAAENPAHETTPSQPLAQ
EEEECCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]