| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is glgP [H]
Identifier: 238921526
GI number: 238921526
Start: 3570720
End: 3573170
Strand: Direct
Name: glgP [H]
Synonym: NT01EI_3678
Alternate gene names: 238921526
Gene position: 3570720-3573170 (Clockwise)
Preceding gene: 238921525
Following gene: 238921531
Centisome position: 93.66
GC content: 58.79
Gene sequence:
>2451_bases ATGATTAACTCACCCTTTAACTATACGTCCCCCGTGATCAGCGTTGAGGCGCTCAAACACTCTATTGCCTATAAGCTGAT GTTTACCGTCGGCAAGGATCCCTCCGTCGCCAACCAGCACGACTGGCTGAATGCGACCCTGTTCGCCGTTCGCGACCGTA TCGTTGAATGCTGGCTGCGCTCGGTTCGCGCCCAATACTCGCAGGATCTGCGCCAGGTCTACTACCTTTCGATGGAGTTC CTGCTGGGACGCACCCTCTCCAACGCCCTGATGGCTATCGGCGTGTATGACGAAACCAAAAAAGCACTCGATGAAATGGG CATCGATCTGGATGAGCTGCTGAACGAGGAGCTGGACCCGGGGCTTGGCAACGGCGGTCTGGGGCGACTGGCGGCCTGCT TCCTGGATTCGATGGCGACCCAGGGGCTGCCGGCCAACGGCTATGGCATCCGCTATGAATATGGCATGTTCAAACAGAAT ATCGTCAACGGGCGGCAGGCCGAATCACCGGACAACTGGCTGGAGTATGGTAACGCCTGGGAGTTCGTCCGCCACAATAC CCGCTACCGGGTTCGCTTTGGCGGCCGCATCCAGCAGGAGGGCAACCGCAGCCGCTGGCTGGAGACCGAAGAGGTTCTGG CGCTGGCCTACGATCAGATAATCCCCGGCTTTGATATCTGCACGACCAATACCCTGCGTCTGTGGTCGGCGCGTGCCAGC AGCGAGATTAACCTGGGTAAATTCAACCAGGGCGATTACTTTGCCGCCGTTGAGGATAAAAACCATTCGGAAAACGTATC GCGTGTACTCTACCCGGACGACTCGACCTACTGCGGGCGCGAGCTGCGTCTGCGCCAGGAGTACTTTCTGGTCTCGGCGA CAGTGCAGGACATCATCAGCCGTCATCTGCTCACCCACCATCGGCTGGATAACCTGGCAGACAAGGTGGCCATCCACCTG AATGACACCCATCCGGTGCTCTCCATTCCGGAGCTGATGCGCCTGCTGATCGACGAGCATCACTACGACTGGGAGCAGTC CTGGCAGGCCGTCATGCAGATCTTCTCCTATACCAACCACACCCTGATGAGCGAGGCGCTGGAAACCTGGCCGGTGGATA TGCTGGGACGTATTCTGCCGCGCCATCTGCAGATCATTTTTGAGATCAACGACCACTTTCTCAAGGAGGTGCAGAGCGCC TACCCCGACGACGATGCCCTGCTGCGCCGGGTGTCGATCATCGATGAGAGCAACGGCCGTCAGGTGCGTATGGCCTGGCT GGCGGTGGTTGCCAGCCACAAGGTCAACGGCGTCTCCAAGCTGCACTCAGAGCTGATGGTGACCTCACTGTTCGCCGACT TCGCCCGCCTGTTCCCTGGGCGCTTCTGTAACAAAACCAACGGGATAACCCCCCGTCGCTGGCTGGCGCTGGCCAATCAG TCCCTGTCAAAGGTGCTGGACGGCGCTATCGGGCAGCGCTGGCGCACCGATCTGAGCATGCTCAGCGAGCTGCTACCGCA CGCCGACTACCCCACCTTTATCCGCGAAATTCAACTGGCCAAGCAACACAATAAACGCCAGCTGGCGATGTACGTCGCAC AACACCTGAATACGGTGATTAATCCCAAGGCGCTGTTTGACGTCCAGGTCAAACGCATTCACGAATATAAGCGCCAGCTG CTCAACGTGCTGCACATCATTACGCTGTATAACCGTATCCTGCAGGAGCCGGACGCGGAGCGGGTGCCACGGGTGAAAAT CTTCGCCGGTAAGGCGGCCTCCGCCTACTACAATGCCAAGCTGATCATCCGCCTGATCAACGACGTCGCCAGGGTGATCA ACGCCGACGAGCGGCTGGGCGGTCAGCTGAAGGTCGTTTTCATCCCCAACTACAGCGTCAGCCTGGCGCAGCTGATCATT CCAGCGGCCGATCTGTCAGAGCAGATCTCGACCGCCGGCACCGAGGCCTCCGGCACCAGCAATATGAAGTTCGCCCTTAA CGGCGCGCTGACTATCGGTACCCTGGACGGCGCCAACGTTGAGATCCGCGAGCAGGTCGGCGCCGCAAATATATTTATCT TCGGCAATACTACCGGGGAGGTGGAGGCGCTGCGGCGTAACGGCTATAACCCACGCGACTACTACGAGCGCGATCCGGAG TTGAACCAGGTGCTGAACCAGATAGCCTCCGGGCTGTTTTGCCCAGAGGAGCCGCGGCGCTACGCCAGTCTGTTTGATGC GCTGATTAACTTTGGCGATCACTATCAGCTGCTGGCGGACTACCGCAGCTATGTCGATATGCAGGATCAGGTGGATGAGG TGTACGCCCACCCCGACGAGTGGGCGCGTAAGGCGCTGCAGAATATCGCCAACATGGGGTATTTCTCGTCAGACCGCACC ATTCGTGAGTATGCCGACGAGATCTGGCAGATCAAACCGGTCAAGCTCTGA
Upstream 100 bases:
>100_bases CTCTGGCGGAACAACCCCTGGCAGCACATGGATATGCGCAGGGGCCAACGCCGTACTACCATAACCGGGCATGGCCCGGC ACCGAGGATCGGGAGCTGTC
Downstream 100 bases:
>100_bases GTGGCCCAGCGAGCCAAGGCCTCCCGCAGGGGGCCTTGGCTATTTTCAGGAAGACGACGATGTCTCCGCCGCCGGGCGCC GGGCCGCCAGCCACTCGGCC
Product: glycogen phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MINSPFNYTSPVISVEALKHSIAYKLMFTVGKDPSVANQHDWLNATLFAVRDRIVECWLRSVRAQYSQDLRQVYYLSMEF LLGRTLSNALMAIGVYDETKKALDEMGIDLDELLNEELDPGLGNGGLGRLAACFLDSMATQGLPANGYGIRYEYGMFKQN IVNGRQAESPDNWLEYGNAWEFVRHNTRYRVRFGGRIQQEGNRSRWLETEEVLALAYDQIIPGFDICTTNTLRLWSARAS SEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYCGRELRLRQEYFLVSATVQDIISRHLLTHHRLDNLADKVAIHL NDTHPVLSIPELMRLLIDEHHYDWEQSWQAVMQIFSYTNHTLMSEALETWPVDMLGRILPRHLQIIFEINDHFLKEVQSA YPDDDALLRRVSIIDESNGRQVRMAWLAVVASHKVNGVSKLHSELMVTSLFADFARLFPGRFCNKTNGITPRRWLALANQ SLSKVLDGAIGQRWRTDLSMLSELLPHADYPTFIREIQLAKQHNKRQLAMYVAQHLNTVINPKALFDVQVKRIHEYKRQL LNVLHIITLYNRILQEPDAERVPRVKIFAGKAASAYYNAKLIIRLINDVARVINADERLGGQLKVVFIPNYSVSLAQLII PAADLSEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIREQVGAANIFIFGNTTGEVEALRRNGYNPRDYYERDPE LNQVLNQIASGLFCPEEPRRYASLFDALINFGDHYQLLADYRSYVDMQDQVDEVYAHPDEWARKALQNIANMGYFSSDRT IREYADEIWQIKPVKL
Sequences:
>Translated_816_residues MINSPFNYTSPVISVEALKHSIAYKLMFTVGKDPSVANQHDWLNATLFAVRDRIVECWLRSVRAQYSQDLRQVYYLSMEF LLGRTLSNALMAIGVYDETKKALDEMGIDLDELLNEELDPGLGNGGLGRLAACFLDSMATQGLPANGYGIRYEYGMFKQN IVNGRQAESPDNWLEYGNAWEFVRHNTRYRVRFGGRIQQEGNRSRWLETEEVLALAYDQIIPGFDICTTNTLRLWSARAS SEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYCGRELRLRQEYFLVSATVQDIISRHLLTHHRLDNLADKVAIHL NDTHPVLSIPELMRLLIDEHHYDWEQSWQAVMQIFSYTNHTLMSEALETWPVDMLGRILPRHLQIIFEINDHFLKEVQSA YPDDDALLRRVSIIDESNGRQVRMAWLAVVASHKVNGVSKLHSELMVTSLFADFARLFPGRFCNKTNGITPRRWLALANQ SLSKVLDGAIGQRWRTDLSMLSELLPHADYPTFIREIQLAKQHNKRQLAMYVAQHLNTVINPKALFDVQVKRIHEYKRQL LNVLHIITLYNRILQEPDAERVPRVKIFAGKAASAYYNAKLIIRLINDVARVINADERLGGQLKVVFIPNYSVSLAQLII PAADLSEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIREQVGAANIFIFGNTTGEVEALRRNGYNPRDYYERDPE LNQVLNQIASGLFCPEEPRRYASLFDALINFGDHYQLLADYRSYVDMQDQVDEVYAHPDEWARKALQNIANMGYFSSDRT IREYADEIWQIKPVKL >Mature_816_residues MINSPFNYTSPVISVEALKHSIAYKLMFTVGKDPSVANQHDWLNATLFAVRDRIVECWLRSVRAQYSQDLRQVYYLSMEF LLGRTLSNALMAIGVYDETKKALDEMGIDLDELLNEELDPGLGNGGLGRLAACFLDSMATQGLPANGYGIRYEYGMFKQN IVNGRQAESPDNWLEYGNAWEFVRHNTRYRVRFGGRIQQEGNRSRWLETEEVLALAYDQIIPGFDICTTNTLRLWSARAS SEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYCGRELRLRQEYFLVSATVQDIISRHLLTHHRLDNLADKVAIHL NDTHPVLSIPELMRLLIDEHHYDWEQSWQAVMQIFSYTNHTLMSEALETWPVDMLGRILPRHLQIIFEINDHFLKEVQSA YPDDDALLRRVSIIDESNGRQVRMAWLAVVASHKVNGVSKLHSELMVTSLFADFARLFPGRFCNKTNGITPRRWLALANQ SLSKVLDGAIGQRWRTDLSMLSELLPHADYPTFIREIQLAKQHNKRQLAMYVAQHLNTVINPKALFDVQVKRIHEYKRQL LNVLHIITLYNRILQEPDAERVPRVKIFAGKAASAYYNAKLIIRLINDVARVINADERLGGQLKVVFIPNYSVSLAQLII PAADLSEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIREQVGAANIFIFGNTTGEVEALRRNGYNPRDYYERDPE LNQVLNQIASGLFCPEEPRRYASLFDALINFGDHYQLLADYRSYVDMQDQVDEVYAHPDEWARKALQNIANMGYFSSDRT IREYADEIWQIKPVKL
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI21361370, Length=810, Percent_Identity=50.9876543209877, Blast_Score=808, Evalue=0.0, Organism=Homo sapiens, GI5032009, Length=812, Percent_Identity=49.7536945812808, Blast_Score=797, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=813, Percent_Identity=49.9384993849939, Blast_Score=793, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=813, Percent_Identity=48.7084870848708, Blast_Score=747, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=665, Percent_Identity=49.9248120300752, Blast_Score=689, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=815, Percent_Identity=75.8282208588957, Blast_Score=1283, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=768, Percent_Identity=46.3541666666667, Blast_Score=696, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=811, Percent_Identity=49.691738594328, Blast_Score=800, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=811, Percent_Identity=49.691738594328, Blast_Score=800, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=811, Percent_Identity=47.1023427866831, Blast_Score=703, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=811, Percent_Identity=50.924784217016, Blast_Score=813, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=811, Percent_Identity=50.924784217016, Blast_Score=813, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 93282; Mature: 93282
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINSPFNYTSPVISVEALKHSIAYKLMFTVGKDPSVANQHDWLNATLFAVRDRIVECWLR CCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH SVRAQYSQDLRQVYYLSMEFLLGRTLSNALMAIGVYDETKKALDEMGIDLDELLNEELDP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHHHHHHHCCC GLGNGGLGRLAACFLDSMATQGLPANGYGIRYEYGMFKQNIVNGRQAESPDNWLEYGNAW CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCCCHHHHHCCCHH EFVRHNTRYRVRFGGRIQQEGNRSRWLETEEVLALAYDQIIPGFDICTTNTLRLWSARAS HHHHCCCEEEEEECCEECCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCC SEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYCGRELRLRQEYFLVSATVQDIIS CCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RHLLTHHRLDNLADKVAIHLNDTHPVLSIPELMRLLIDEHHYDWEQSWQAVMQIFSYTNH HHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH TLMSEALETWPVDMLGRILPRHLQIIFEINDHFLKEVQSAYPDDDALLRRVSIIDESNGR HHHHHHHHHCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC QVRMAWLAVVASHKVNGVSKLHSELMVTSLFADFARLFPGRFCNKTNGITPRRWLALANQ EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHH SLSKVLDGAIGQRWRTDLSMLSELLPHADYPTFIREIQLAKQHNKRQLAMYVAQHLNTVI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC NPKALFDVQVKRIHEYKRQLLNVLHIITLYNRILQEPDAERVPRVKIFAGKAASAYYNAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEECCCHHHHHHHH LIIRLINDVARVINADERLGGQLKVVFIPNYSVSLAQLIIPAADLSEQISTAGTEASGTS HHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC NMKFALNGALTIGTLDGANVEIREQVGAANIFIFGNTTGEVEALRRNGYNPRDYYERDPE CCEEEEECEEEEEECCCCCEEHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHCCCCCH LNQVLNQIASGLFCPEEPRRYASLFDALINFGDHYQLLADYRSYVDMQDQVDEVYAHPDE HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHH WARKALQNIANMGYFSSDRTIREYADEIWQIKPVKL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure MINSPFNYTSPVISVEALKHSIAYKLMFTVGKDPSVANQHDWLNATLFAVRDRIVECWLR CCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH SVRAQYSQDLRQVYYLSMEFLLGRTLSNALMAIGVYDETKKALDEMGIDLDELLNEELDP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHHHHHHHCCC GLGNGGLGRLAACFLDSMATQGLPANGYGIRYEYGMFKQNIVNGRQAESPDNWLEYGNAW CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCCCCCCCHHHHHCCCHH EFVRHNTRYRVRFGGRIQQEGNRSRWLETEEVLALAYDQIIPGFDICTTNTLRLWSARAS HHHHCCCEEEEEECCEECCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCC SEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYCGRELRLRQEYFLVSATVQDIIS CCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RHLLTHHRLDNLADKVAIHLNDTHPVLSIPELMRLLIDEHHYDWEQSWQAVMQIFSYTNH HHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH TLMSEALETWPVDMLGRILPRHLQIIFEINDHFLKEVQSAYPDDDALLRRVSIIDESNGR HHHHHHHHHCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC QVRMAWLAVVASHKVNGVSKLHSELMVTSLFADFARLFPGRFCNKTNGITPRRWLALANQ EEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHH SLSKVLDGAIGQRWRTDLSMLSELLPHADYPTFIREIQLAKQHNKRQLAMYVAQHLNTVI HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC NPKALFDVQVKRIHEYKRQLLNVLHIITLYNRILQEPDAERVPRVKIFAGKAASAYYNAK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEECCCHHHHHHHH LIIRLINDVARVINADERLGGQLKVVFIPNYSVSLAQLIIPAADLSEQISTAGTEASGTS HHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCC NMKFALNGALTIGTLDGANVEIREQVGAANIFIFGNTTGEVEALRRNGYNPRDYYERDPE CCEEEEECEEEEEECCCCCEEHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHCCCCCH LNQVLNQIASGLFCPEEPRRYASLFDALINFGDHYQLLADYRSYVDMQDQVDEVYAHPDE HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHH WARKALQNIANMGYFSSDRTIREYADEIWQIKPVKL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2645169; 3047129; 9278503; 2975249; 3097003 [H]