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The map label for this gene is glgB [H]

Identifier: 238921522

GI number: 238921522

Start: 3563591

End: 3565801

Strand: Direct

Name: glgB [H]

Synonym: NT01EI_3674

Alternate gene names: 238921522

Gene position: 3563591-3565801 (Clockwise)

Preceding gene: 238921521

Following gene: 238921523

Centisome position: 93.48

GC content: 60.52

Gene sequence:

>2211_bases
ATGTCTGTACTTCCCAGCACTCACAAGATCCAACAACTGCTCGCCGGCCAGTGCGCCGATCCCTTCGCTTTGCTGGGGAT
GCATACGACAGCCAAAGGGCTGGCCGTGCGGGCGCTGATGCCCGAGGCAGAATCGGTACAGGTGGTCGACCGTAAAAACG
GGCGCACGCTGGTCACGCTGGAGCGCATCCATGAGGGCGGTTTCTTCTGCGGTCTGGTACCGCGGCGTAAGAATCCCTTC
CCTTATCTGCTGCGCGTCACCTGGGATAATCATCAGCAGCTGCTGGAAGATCCCTACCGTTTCGGGCCATTGTTAGGTGA
AATCGATAACTGGCTGCTCAAAGAGGGGACCCATCTGCGTCCCTATGAACGATTGGGCGCCCACCTGACCCAACTGGCCG
ATATCCGCGGCGTCAGTTTCGCCGTCTGGGCACCCAACGCCCAGCGCGTCTCCGTAGTCGGCAACTTTAATGCCTGGGAC
GGACGCCGCCACCCGATGCGCCTGCGCCGGGAAAGCGGTATCTGGGAGCTGTTCATCCCCGGCATAGAGGCCGGGGAGCT
GTACAAGTTTGAGCTGATCGACGCCCGCGGCGAGCGGGTACTGAAAGCTGACCCCTATGCCTTTGAGGCCCAGATGCGGC
CGGATACCGCCTCGCTGGTCGCTCCGCTGCCGGAGAAAAGCGCCATCAGCGCCCAACGCAGTGCCGCCAATGGCTTCAGT
GCTCCGATCTCCATCTATGAGGTACACCTCGGCTCCTGGCGTCGCCACAGCGACAATGGCTACTGGCTGAGCTACCGGGA
GATGGCCGAGCAGCTCATCCCCTACGTCAAAGAGATGGGGTTTACCCATATTGAGCTGCTGCCGATCAATGAACATCCCT
TCGACGGCTCCTGGGGCTATCAGCCGCTGGGGTTATACGCCCCGACCCGGCGCTACGGTACTCCGCAGGAGTTCCGCGAA
TTTATCGATGCCGCCCACGCCGCCGGGATCAATGTCCTGCTCGACTGGGTTCCCGGCCACTTTCCCAGCGACGAGTGGGG
GCTGGCTAACTTCGACGGTACGGCGCTGTATGAATACGCCGATCCGCGCGAAGGCTTCCATCAAGACTGGAATACCCTGA
TCTACAACTATGGCCGCTATGAAGTACGTAACTTCCTGGCGGGCAACGCCCTATTCTGGCAGGAGCGCTATGGCATCGAC
GGCCTGCGCGTCGACGCCGTGGCCTCGATGGTCTACCGCGACTACAGCCGCGCCGCGGGCGAATGGGTTCCCAACTGCCA
CGGCGGAAACCAGAATTTGGAGGCCATCGAGTTCCTGCGCTATACCAACAGAACTCTGGGAGAGCAACACCCCGGCAGCG
TCTGTATGGCTGAAGAGTCCACTGACTTTTCCGGCGTCACCCTGCCACCGGACGATGGCGGCCTGGGCTTCCACTTCAAG
TGGAATATGGGCTGGATGCACGACACCCTCAACTACATGAAGCACGATCCGGTCTATCGTAAATATCACCACAATCTGAT
GACCTTCGGCCTGCTGTATGCCTGGAGCGAAAATTTTGTGTTGGCCCTCTCTCACGACGAAGTCGTGCACGGCAAGGGCT
CGCTGTTGGATAAAATGCCCGGTGATGCCTGGCAGAAATTCGCCAACCTGCGCGCCTACTACGGCTTTATGTGGGCACAT
CCCGGCAAAAAACTGCTGTTTATGGGCGGGGAGTTTGCCCAGGGGCGCGAATGGAACAACGAGTCCAGCCTGGACTGGCA
CCTGCTGGAGGGCGAAGACAACTGGCACCACGGCGTACAGCGGCTGGTACGGGATCTGAACCTCTGTTATCGCAGCTGCG
GTGCCCTGCACCGTTGGGATTGCGACGCGCGCGGCTTTCGCTGGCGGGTGGTCGATGACGATCAGAACTCAGTCTTCGCC
TTTGTCCGCCGCGATGATATGGGCAACGAGGTGCTGGTGGTCAGTAACTTTACGCCGGTCCCCCGTCACCATTACCGTAT
CGGCGTCGATCTGCCGGGGCGCTACCGCGAAATTCTCAATACTGACTCCAGCCACTACCACGGCAGCAACAGCGGCAATC
AGGGCGGCGTGCTCAGCGAGGCGGTGGGCAGCCACGGCTGTGAGTACTCCATCCAACTGACCCTGCCGCCGCTGTCAACG
CTCTATCTGTGTCTGGACAATGGGGACGGAGACGATGCTCAGGCCGGGTAA

Upstream 100 bases:

>100_bases
TGTGCGCTGCAGGGTACCGACACACCCTGTCAGCGCCCAGACTGAATGGCCGGCATGAGGATGCACCCCTTCCCCTGCCG
TCAATTAAAGGAAGAATGCC

Downstream 100 bases:

>100_bases
ACCCTATCCGCTGGGCGCGCATCTGACGCCACAGGGGGTCAATTTCGCCATCTACTCGGCGCACGCGCAGCGCATAGAGC
TGTGCCTGTCCGATAGGGAC

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 736; Mature: 735

Protein sequence:

>736_residues
MSVLPSTHKIQQLLAGQCADPFALLGMHTTAKGLAVRALMPEAESVQVVDRKNGRTLVTLERIHEGGFFCGLVPRRKNPF
PYLLRVTWDNHQQLLEDPYRFGPLLGEIDNWLLKEGTHLRPYERLGAHLTQLADIRGVSFAVWAPNAQRVSVVGNFNAWD
GRRHPMRLRRESGIWELFIPGIEAGELYKFELIDARGERVLKADPYAFEAQMRPDTASLVAPLPEKSAISAQRSAANGFS
APISIYEVHLGSWRRHSDNGYWLSYREMAEQLIPYVKEMGFTHIELLPINEHPFDGSWGYQPLGLYAPTRRYGTPQEFRE
FIDAAHAAGINVLLDWVPGHFPSDEWGLANFDGTALYEYADPREGFHQDWNTLIYNYGRYEVRNFLAGNALFWQERYGID
GLRVDAVASMVYRDYSRAAGEWVPNCHGGNQNLEAIEFLRYTNRTLGEQHPGSVCMAEESTDFSGVTLPPDDGGLGFHFK
WNMGWMHDTLNYMKHDPVYRKYHHNLMTFGLLYAWSENFVLALSHDEVVHGKGSLLDKMPGDAWQKFANLRAYYGFMWAH
PGKKLLFMGGEFAQGREWNNESSLDWHLLEGEDNWHHGVQRLVRDLNLCYRSCGALHRWDCDARGFRWRVVDDDQNSVFA
FVRRDDMGNEVLVVSNFTPVPRHHYRIGVDLPGRYREILNTDSSHYHGSNSGNQGGVLSEAVGSHGCEYSIQLTLPPLST
LYLCLDNGDGDDAQAG

Sequences:

>Translated_736_residues
MSVLPSTHKIQQLLAGQCADPFALLGMHTTAKGLAVRALMPEAESVQVVDRKNGRTLVTLERIHEGGFFCGLVPRRKNPF
PYLLRVTWDNHQQLLEDPYRFGPLLGEIDNWLLKEGTHLRPYERLGAHLTQLADIRGVSFAVWAPNAQRVSVVGNFNAWD
GRRHPMRLRRESGIWELFIPGIEAGELYKFELIDARGERVLKADPYAFEAQMRPDTASLVAPLPEKSAISAQRSAANGFS
APISIYEVHLGSWRRHSDNGYWLSYREMAEQLIPYVKEMGFTHIELLPINEHPFDGSWGYQPLGLYAPTRRYGTPQEFRE
FIDAAHAAGINVLLDWVPGHFPSDEWGLANFDGTALYEYADPREGFHQDWNTLIYNYGRYEVRNFLAGNALFWQERYGID
GLRVDAVASMVYRDYSRAAGEWVPNCHGGNQNLEAIEFLRYTNRTLGEQHPGSVCMAEESTDFSGVTLPPDDGGLGFHFK
WNMGWMHDTLNYMKHDPVYRKYHHNLMTFGLLYAWSENFVLALSHDEVVHGKGSLLDKMPGDAWQKFANLRAYYGFMWAH
PGKKLLFMGGEFAQGREWNNESSLDWHLLEGEDNWHHGVQRLVRDLNLCYRSCGALHRWDCDARGFRWRVVDDDQNSVFA
FVRRDDMGNEVLVVSNFTPVPRHHYRIGVDLPGRYREILNTDSSHYHGSNSGNQGGVLSEAVGSHGCEYSIQLTLPPLST
LYLCLDNGDGDDAQAG
>Mature_735_residues
SVLPSTHKIQQLLAGQCADPFALLGMHTTAKGLAVRALMPEAESVQVVDRKNGRTLVTLERIHEGGFFCGLVPRRKNPFP
YLLRVTWDNHQQLLEDPYRFGPLLGEIDNWLLKEGTHLRPYERLGAHLTQLADIRGVSFAVWAPNAQRVSVVGNFNAWDG
RRHPMRLRRESGIWELFIPGIEAGELYKFELIDARGERVLKADPYAFEAQMRPDTASLVAPLPEKSAISAQRSAANGFSA
PISIYEVHLGSWRRHSDNGYWLSYREMAEQLIPYVKEMGFTHIELLPINEHPFDGSWGYQPLGLYAPTRRYGTPQEFREF
IDAAHAAGINVLLDWVPGHFPSDEWGLANFDGTALYEYADPREGFHQDWNTLIYNYGRYEVRNFLAGNALFWQERYGIDG
LRVDAVASMVYRDYSRAAGEWVPNCHGGNQNLEAIEFLRYTNRTLGEQHPGSVCMAEESTDFSGVTLPPDDGGLGFHFKW
NMGWMHDTLNYMKHDPVYRKYHHNLMTFGLLYAWSENFVLALSHDEVVHGKGSLLDKMPGDAWQKFANLRAYYGFMWAHP
GKKLLFMGGEFAQGREWNNESSLDWHLLEGEDNWHHGVQRLVRDLNLCYRSCGALHRWDCDARGFRWRVVDDDQNSVFAF
VRRDDMGNEVLVVSNFTPVPRHHYRIGVDLPGRYREILNTDSSHYHGSNSGNQGGVLSEAVGSHGCEYSIQLTLPPLSTL
YLCLDNGDGDDAQAG

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=660, Percent_Identity=27.7272727272727, Blast_Score=186, Evalue=8e-47,
Organism=Escherichia coli, GI1789839, Length=715, Percent_Identity=70.4895104895105, Blast_Score=1069, Evalue=0.0,
Organism=Escherichia coli, GI2367229, Length=341, Percent_Identity=26.099706744868, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17554896, Length=614, Percent_Identity=26.3843648208469, Blast_Score=188, Evalue=8e-48,
Organism=Caenorhabditis elegans, GI32564391, Length=567, Percent_Identity=26.4550264550265, Blast_Score=166, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6320826, Length=678, Percent_Identity=25.9587020648968, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI28573410, Length=599, Percent_Identity=28.5475792988314, Blast_Score=176, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 83771; Mature: 83640

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLPSTHKIQQLLAGQCADPFALLGMHTTAKGLAVRALMPEAESVQVVDRKNGRTLVTL
CCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEE
ERIHEGGFFCGLVPRRKNPFPYLLRVTWDNHQQLLEDPYRFGPLLGEIDNWLLKEGTHLR
EEHHCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHCHHHHCCHHHHHHHHHHHCCCCCC
PYERLGAHLTQLADIRGVSFAVWAPNAQRVSVVGNFNAWDGRRHPMRLRRESGIWELFIP
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEEC
GIEAGELYKFELIDARGERVLKADPYAFEAQMRPDTASLVAPLPEKSAISAQRSAANGFS
CCCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHCCCCCC
APISIYEVHLGSWRRHSDNGYWLSYREMAEQLIPYVKEMGFTHIELLPINEHPFDGSWGY
CCEEEEEEECCCCEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYAPTRRYGTPQEFREFIDAAHAAGINVLLDWVPGHFPSDEWGLANFDGTALYEYA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECC
DPREGFHQDWNTLIYNYGRYEVRNFLAGNALFWQERYGIDGLRVDAVASMVYRDYSRAAG
CCCHHHHHCCHHHEEECCHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHC
EWVPNCHGGNQNLEAIEFLRYTNRTLGEQHPGSVCMAEESTDFSGVTLPPDDGGLGFHFK
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCEEEEEE
WNMGWMHDTLNYMKHDPVYRKYHHNLMTFGLLYAWSENFVLALSHDEVVHGKGSLLDKMP
ECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCEEEEEECCCEECCCCCHHHCCC
GDAWQKFANLRAYYGFMWAHPGKKLLFMGGEFAQGREWNNESSLDWHLLEGEDNWHHGVQ
CHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLVRDLNLCYRSCGALHRWDCDARGFRWRVVDDDQNSVFAFVRRDDMGNEVLVVSNFTPV
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
PRHHYRIGVDLPGRYREILNTDSSHYHGSNSGNQGGVLSEAVGSHGCEYSIQLTLPPLST
CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCE
LYLCLDNGDGDDAQAG
EEEEEECCCCCCCCCC
>Mature Secondary Structure 
SVLPSTHKIQQLLAGQCADPFALLGMHTTAKGLAVRALMPEAESVQVVDRKNGRTLVTL
CCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEE
ERIHEGGFFCGLVPRRKNPFPYLLRVTWDNHQQLLEDPYRFGPLLGEIDNWLLKEGTHLR
EEHHCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHCHHHHCCHHHHHHHHHHHCCCCCC
PYERLGAHLTQLADIRGVSFAVWAPNAQRVSVVGNFNAWDGRRHPMRLRRESGIWELFIP
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEEC
GIEAGELYKFELIDARGERVLKADPYAFEAQMRPDTASLVAPLPEKSAISAQRSAANGFS
CCCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHCCCCCC
APISIYEVHLGSWRRHSDNGYWLSYREMAEQLIPYVKEMGFTHIELLPINEHPFDGSWGY
CCEEEEEEECCCCEEECCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYAPTRRYGTPQEFREFIDAAHAAGINVLLDWVPGHFPSDEWGLANFDGTALYEYA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECC
DPREGFHQDWNTLIYNYGRYEVRNFLAGNALFWQERYGIDGLRVDAVASMVYRDYSRAAG
CCCHHHHHCCHHHEEECCHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHC
EWVPNCHGGNQNLEAIEFLRYTNRTLGEQHPGSVCMAEESTDFSGVTLPPDDGGLGFHFK
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEECCCCCCCEEEEEE
WNMGWMHDTLNYMKHDPVYRKYHHNLMTFGLLYAWSENFVLALSHDEVVHGKGSLLDKMP
ECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCEEEEEECCCEECCCCCHHHCCC
GDAWQKFANLRAYYGFMWAHPGKKLLFMGGEFAQGREWNNESSLDWHLLEGEDNWHHGVQ
CHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLVRDLNLCYRSCGALHRWDCDARGFRWRVVDDDQNSVFAFVRRDDMGNEVLVVSNFTPV
HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
PRHHYRIGVDLPGRYREILNTDSSHYHGSNSGNQGGVLSEAVGSHGCEYSIQLTLPPLST
CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCE
LYLCLDNGDGDDAQAG
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA