| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is yheS [H]
Identifier: 238921458
GI number: 238921458
Start: 3494790
End: 3496676
Strand: Direct
Name: yheS [H]
Synonym: NT01EI_3610
Alternate gene names: 238921458
Gene position: 3494790-3496676 (Clockwise)
Preceding gene: 238921453
Following gene: 238921460
Centisome position: 91.67
GC content: 62.64
Gene sequence:
>1887_bases GTGCTGCTGGACAATGCCTCGGCAACGATCAACCCCGGCCAAAAGGTGGGCCTGGTCGGCAAAAATGGCTGTGGGAAATC AACGCTGCTGGCGCTGTTGAAAAATGAGCTGAGCGCCGACGGCGGTAATCTGACCCTGCCCGGCAACTGGGCCATGGCCT GGGTTAACCAGGAGACGCCGGCGCTGGAAACGCCGGCGCTGGAATATGTGCTCGACGGCGATCGCGAGTTCCGCCAGCTG GAGCAGCAGCTCGATGATGCCAACCAGCGTAACGATGGCAACACGATCGCGCTGATCCACGGCAAGCTGGACGCCATTGC CGCCTGGACCATTCGCGCCCGCGCCTCCAGTCTGCTGCACGGCCTCGGCTTCAGCCAGGAACAGCTCATGCAGCCGGTGA GATCCTTCTCCGGCGGCTGGCGCATGCGCCTGAACCTGGCACAGGCGCTGCTGTGCCGCTCCGATCTGCTGCTGCTCGAC GAACCGACCAACCACCTGGATCTGGACGCGGTGATCTGGCTGGAGCGCTGGCTGAAAAGCTATCCGGGCACACTGATCCT GATTTCACACGACCGTGACTTCCTCGATCCTATCGTGGACAAAATTGTACATATCGAACAGCAGCAGCTGTTTGAATACA GCGGAAACTACTCCTCTTTCGAACTGCAGCGCGCCGGGAAACTGGCGCAGCAGCAGGCGATGTATCAGAGCCAGCAGCAG CGTATCGCCCATCTGCAAAGCTATATCGACCGCTTCAAGGCCAAGGCCAGTAAGGCCAAGCAGGCGCAGAGCCGGGTAAA AATGCTGGAACGCATGGAGCGCATCGCGCCGGCCCACGTCGATAACCCGTTCCACTTCAGCTTCCGCGCGCCGGAAAGCC TGCCGACGCCGCTGCTGCGTATGGAGCACGTCAGCGCCGGCTACGGCGAGCGCACCGTACTCGCCTCGATTAAGCTCAAC CTGGTACCCGGTTCGCGCATCGGTCTGCTGGGACGTAACGGCGCCGGTAAGTCCACCCTGATCAAGCTGCTGGCCGGCGA GCTAGCGCCGCAGCAGGGGGAGGTCGGGCTGGCCAAGGGCGTTCGTCTGGGATACTTCGCCCAGCATCAGCTAGAGTATC TTCGCGCCGACGAATCGCCACTGCAGCACTTAGCCCGCCTGGCGCCGCAGGAGAGCGAACAGCAGCTGCGCGACTATTTA GGGGGCTTCGGTTTTAACGGCGATAAAGTCAGCGAGGCGACCGCGCGCTTTTCCGGCGGCGAGAAGGCGCGCCTGGTACT GGCGCTGATCGTCTGGCAGCGTCCGAACCTGCTGCTGCTCGACGAACCGACCAACCATCTGGATCTGGACATGCGCCAGG CGCTAACCGAAGCGCTGATCGATTTCGAGGGCGCGCTGGTGGTGGTCTCGCACGATCGCCATCTGCTGCGATCCACCACC GACGATCTCTATCTGGTGCACGACGGCCAGGTCGAGCCGTTCGCCGGTGATCTGGACGACTACCAGCGCTGGATGATCGA TCTGCAGCGCCAGGAAAACCAGGCGCCGGCGGATCAGGATGGCGCGCAAACGACCAACAGCGCCCAGGCCAGAAAGGATC AGAAGCGGCGCGAGGCTGAGTTCCGCAGCCAGACTCAGCCGCTGCGCAAGCAGATCGCCGCGCAGGAAAAGCGTATGGAG ACCCTGAGCGCCCAGCTCAATACTCTGGAGGAACGCCTCGCCGACAGCGCGCTGTACGATCCGGCGCGTAAAGAGGAGCT AAACGACATTCTGCAGTGCCAAAGTCAGGCCAAGCTCGGTCTGGAAGAGGCGGAGCTGTGCTGGCTCGATGCGCAGGAGC AGCTCGAAGCGATGTCCCGCGCCTTCACGGAGAGCGATAACGCCTGA
Upstream 100 bases:
>100_bases CCGCGTTATTTACGTCGCCACAACGCCAATTTAACACACACTCAATAGACGACGCTTTATGATTGTTTTCTCATCGCTCC AAATTCGTCGCGGCACCCGG
Downstream 100 bases:
>100_bases GCGCCGCCTAGGCCGCCAGCGTATCCAGCGCCCGCCCCAGGCGGGCCATCCCCTCCTCGATCTCCGCCGTCTCGATCACC AGAGACGGCGTAAAGCGCAG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MLLDNASATINPGQKVGLVGKNGCGKSTLLALLKNELSADGGNLTLPGNWAMAWVNQETPALETPALEYVLDGDREFRQL EQQLDDANQRNDGNTIALIHGKLDAIAAWTIRARASSLLHGLGFSQEQLMQPVRSFSGGWRMRLNLAQALLCRSDLLLLD EPTNHLDLDAVIWLERWLKSYPGTLILISHDRDFLDPIVDKIVHIEQQQLFEYSGNYSSFELQRAGKLAQQQAMYQSQQQ RIAHLQSYIDRFKAKASKAKQAQSRVKMLERMERIAPAHVDNPFHFSFRAPESLPTPLLRMEHVSAGYGERTVLASIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELAPQQGEVGLAKGVRLGYFAQHQLEYLRADESPLQHLARLAPQESEQQLRDYL GGFGFNGDKVSEATARFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT DDLYLVHDGQVEPFAGDLDDYQRWMIDLQRQENQAPADQDGAQTTNSAQARKDQKRREAEFRSQTQPLRKQIAAQEKRME TLSAQLNTLEERLADSALYDPARKEELNDILQCQSQAKLGLEEAELCWLDAQEQLEAMSRAFTESDNA
Sequences:
>Translated_628_residues MLLDNASATINPGQKVGLVGKNGCGKSTLLALLKNELSADGGNLTLPGNWAMAWVNQETPALETPALEYVLDGDREFRQL EQQLDDANQRNDGNTIALIHGKLDAIAAWTIRARASSLLHGLGFSQEQLMQPVRSFSGGWRMRLNLAQALLCRSDLLLLD EPTNHLDLDAVIWLERWLKSYPGTLILISHDRDFLDPIVDKIVHIEQQQLFEYSGNYSSFELQRAGKLAQQQAMYQSQQQ RIAHLQSYIDRFKAKASKAKQAQSRVKMLERMERIAPAHVDNPFHFSFRAPESLPTPLLRMEHVSAGYGERTVLASIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELAPQQGEVGLAKGVRLGYFAQHQLEYLRADESPLQHLARLAPQESEQQLRDYL GGFGFNGDKVSEATARFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT DDLYLVHDGQVEPFAGDLDDYQRWMIDLQRQENQAPADQDGAQTTNSAQARKDQKRREAEFRSQTQPLRKQIAAQEKRME TLSAQLNTLEERLADSALYDPARKEELNDILQCQSQAKLGLEEAELCWLDAQEQLEAMSRAFTESDNA >Mature_628_residues MLLDNASATINPGQKVGLVGKNGCGKSTLLALLKNELSADGGNLTLPGNWAMAWVNQETPALETPALEYVLDGDREFRQL EQQLDDANQRNDGNTIALIHGKLDAIAAWTIRARASSLLHGLGFSQEQLMQPVRSFSGGWRMRLNLAQALLCRSDLLLLD EPTNHLDLDAVIWLERWLKSYPGTLILISHDRDFLDPIVDKIVHIEQQQLFEYSGNYSSFELQRAGKLAQQQAMYQSQQQ RIAHLQSYIDRFKAKASKAKQAQSRVKMLERMERIAPAHVDNPFHFSFRAPESLPTPLLRMEHVSAGYGERTVLASIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELAPQQGEVGLAKGVRLGYFAQHQLEYLRADESPLQHLARLAPQESEQQLRDYL GGFGFNGDKVSEATARFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT DDLYLVHDGQVEPFAGDLDDYQRWMIDLQRQENQAPADQDGAQTTNSAQARKDQKRREAEFRSQTQPLRKQIAAQEKRME TLSAQLNTLEERLADSALYDPARKEELNDILQCQSQAKLGLEEAELCWLDAQEQLEAMSRAFTESDNA
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=526, Percent_Identity=39.3536121673004, Blast_Score=368, Evalue=1e-102, Organism=Homo sapiens, GI27881506, Length=513, Percent_Identity=35.2826510721248, Blast_Score=308, Evalue=8e-84, Organism=Homo sapiens, GI10947137, Length=513, Percent_Identity=35.2826510721248, Blast_Score=308, Evalue=1e-83, Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=35.3817504655494, Blast_Score=277, Evalue=2e-74, Organism=Homo sapiens, GI10947135, Length=537, Percent_Identity=35.3817504655494, Blast_Score=277, Evalue=2e-74, Organism=Escherichia coli, GI1789751, Length=618, Percent_Identity=81.3915857605178, Blast_Score=1040, Evalue=0.0, Organism=Escherichia coli, GI1787041, Length=514, Percent_Identity=34.2412451361868, Blast_Score=300, Evalue=2e-82, Organism=Escherichia coli, GI1787182, Length=633, Percent_Identity=28.5939968404423, Blast_Score=230, Evalue=2e-61, Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=31.1787072243346, Blast_Score=221, Evalue=1e-58, Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=35.7142857142857, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI87081782, Length=505, Percent_Identity=25.7425742574257, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI48994997, Length=221, Percent_Identity=27.6018099547511, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1790739, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=25.4545454545455, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787547, Length=211, Percent_Identity=25.1184834123223, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI48994883, Length=219, Percent_Identity=25.1141552511416, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787029, Length=215, Percent_Identity=23.7209302325581, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786803, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=24.812030075188, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17553372, Length=516, Percent_Identity=39.3410852713178, Blast_Score=357, Evalue=1e-98, Organism=Caenorhabditis elegans, GI17555318, Length=505, Percent_Identity=35.6435643564356, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI17559834, Length=534, Percent_Identity=34.0823970037453, Blast_Score=303, Evalue=2e-82, Organism=Caenorhabditis elegans, GI17556528, Length=191, Percent_Identity=28.7958115183246, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=534, Percent_Identity=35.9550561797753, Blast_Score=344, Evalue=2e-95, Organism=Saccharomyces cerevisiae, GI6320874, Length=514, Percent_Identity=34.6303501945525, Blast_Score=309, Evalue=1e-84, Organism=Saccharomyces cerevisiae, GI6325030, Length=377, Percent_Identity=32.0954907161804, Blast_Score=165, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6324314, Length=393, Percent_Identity=28.498727735369, Blast_Score=147, Evalue=4e-36, Organism=Saccharomyces cerevisiae, GI6323278, Length=386, Percent_Identity=28.2383419689119, Blast_Score=144, Evalue=5e-35, Organism=Drosophila melanogaster, GI24666836, Length=514, Percent_Identity=38.715953307393, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI24642252, Length=529, Percent_Identity=36.2948960302458, Blast_Score=345, Evalue=7e-95, Organism=Drosophila melanogaster, GI18859989, Length=529, Percent_Identity=36.2948960302458, Blast_Score=345, Evalue=7e-95, Organism=Drosophila melanogaster, GI24641342, Length=530, Percent_Identity=36.4150943396226, Blast_Score=317, Evalue=1e-86, Organism=Drosophila melanogaster, GI116007184, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=2e-12, Organism=Drosophila melanogaster, GI221500365, Length=204, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70392; Mature: 70392
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLDNASATINPGQKVGLVGKNGCGKSTLLALLKNELSADGGNLTLPGNWAMAWVNQETP CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCC ALETPALEYVLDGDREFRQLEQQLDDANQRNDGNTIALIHGKLDAIAAWTIRARASSLLH CCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH GLGFSQEQLMQPVRSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDAVIWLERWLKS HCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHH YPGTLILISHDRDFLDPIVDKIVHIEQQQLFEYSGNYSSFELQRAGKLAQQQAMYQSQQQ CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH RIAHLQSYIDRFKAKASKAKQAQSRVKMLERMERIAPAHVDNPFHFSFRAPESLPTPLLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHH MEHVSAGYGERTVLASIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPQQGEVGLAKG HHHHCCCCCCEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHCC VRLGYFAQHQLEYLRADESPLQHLARLAPQESEQQLRDYLGGFGFNGDKVSEATARFSGG CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCC EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT CHHHHHEEEHEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCC DDLYLVHDGQVEPFAGDLDDYQRWMIDLQRQENQAPADQDGAQTTNSAQARKDQKRREAE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FRSQTQPLRKQIAAQEKRMETLSAQLNTLEERLADSALYDPARKEELNDILQCQSQAKLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC LEEAELCWLDAQEQLEAMSRAFTESDNA CCHHHEEECCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLLDNASATINPGQKVGLVGKNGCGKSTLLALLKNELSADGGNLTLPGNWAMAWVNQETP CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCC ALETPALEYVLDGDREFRQLEQQLDDANQRNDGNTIALIHGKLDAIAAWTIRARASSLLH CCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH GLGFSQEQLMQPVRSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDAVIWLERWLKS HCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHH YPGTLILISHDRDFLDPIVDKIVHIEQQQLFEYSGNYSSFELQRAGKLAQQQAMYQSQQQ CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH RIAHLQSYIDRFKAKASKAKQAQSRVKMLERMERIAPAHVDNPFHFSFRAPESLPTPLLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHH MEHVSAGYGERTVLASIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPQQGEVGLAKG HHHHCCCCCCEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHCC VRLGYFAQHQLEYLRADESPLQHLARLAPQESEQQLRDYLGGFGFNGDKVSEATARFSGG CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCC EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT CHHHHHEEEHEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCC DDLYLVHDGQVEPFAGDLDDYQRWMIDLQRQENQAPADQDGAQTTNSAQARKDQKRREAE CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH FRSQTQPLRKQIAAQEKRMETLSAQLNTLEERLADSALYDPARKEELNDILQCQSQAKLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC LEEAELCWLDAQEQLEAMSRAFTESDNA CCHHHEEECCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]