| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921123
Identifier: 238921123
GI number: 238921123
Start: 3139898
End: 3140740
Strand: Reverse
Name: 238921123
Synonym: NT01EI_3262
Alternate gene names: NA
Gene position: 3140740-3139898 (Counterclockwise)
Preceding gene: 238921124
Following gene: 238921120
Centisome position: 82.38
GC content: 55.28
Gene sequence:
>843_bases ATGTTCATAAAACAGCCTGCTTCGCCCGGTGCGGACGATGACGTCAATGCTGAATGGGATGAGCATCTGCGCTTTTATCA GTTATGTGGCGTTATGGCGGCGGCCAGTAGCGTACTGCTGACATTCATGATGGTGCTGATGTTTCCCGCTGATTTTAAAG GGCGTGCCTTTATGCTAGCCGGGAGCTATCTGGGGCCGGTGACGCTGTTGTTGCTGGTGGGGATGCTGCGTTTTCCACGC AGTTGTTCTTGGGCGCTATTCATTGGCTTTAACGTCTTTCTATTGTACTTATTCTTACGGGGAACTGCCTTTAATCTATT GATAAGTTTTCTGTTTGTTCTATTTTTTCTGTTTGGCGCCGTGGCAGCGACACAGCGCGGGCGTAGGCTGCATGGCGGCG CCCGCCCGCTGTGGCTGGCCCGGCGCGGTTGGCTTCCGGTCTCTGTATTAATATTGCTGGCGCTGTCAGTGAGCAGCTTC AGCAGCGGTTTTGTCCTGCGCTGGCTGGAGAGAAAGCTGGAGAATCCATTGCTATGGATTGAATACCGCCACCAGATGCT GGTTCGCTATCTACATCTGTCCGGGGAGGATACATCGGATGCGCCGGGGATTTGGCTACGGCGGGTACGCCTGGAAGGGC GTACGCTGGTGTTTGTCTACCGGGTGCGTATGGAGGCGGAGACAGCCAGTGAGGATACCCTGCAGCATCACGCCATGGCG GACTTTCGCCAGCACTGTCACGAGCGTGGCGTGCGTCAGTTTGGCATGAAGGTGATGTATGTCTACCAGGTGCTCCAGGA GGAACGTATTCTGGTGCTGAGCCGTAGGGACTGCGTGGAGTGA
Upstream 100 bases:
>100_bases GGCGGCAGCGGGCCGTTTTTTATTGCGTTAAAGTATCAGTGAACTATTTGTTGTTGTTGTGTTATGTTTTGTGGGTATTT ATTCACAAGCCTAATTAAAC
Downstream 100 bases:
>100_bases GCGGTACAGACAGAGGCTCGGTGGGATAGACAGAGGGACGTTTACGCCCCTCTGTCGTTGGTATCGCATGGCTTATTCGC CGTCGCTGGCCTTTTTGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MFIKQPASPGADDDVNAEWDEHLRFYQLCGVMAAASSVLLTFMMVLMFPADFKGRAFMLAGSYLGPVTLLLLVGMLRFPR SCSWALFIGFNVFLLYLFLRGTAFNLLISFLFVLFFLFGAVAATQRGRRLHGGARPLWLARRGWLPVSVLILLALSVSSF SSGFVLRWLERKLENPLLWIEYRHQMLVRYLHLSGEDTSDAPGIWLRRVRLEGRTLVFVYRVRMEAETASEDTLQHHAMA DFRQHCHERGVRQFGMKVMYVYQVLQEERILVLSRRDCVE
Sequences:
>Translated_280_residues MFIKQPASPGADDDVNAEWDEHLRFYQLCGVMAAASSVLLTFMMVLMFPADFKGRAFMLAGSYLGPVTLLLLVGMLRFPR SCSWALFIGFNVFLLYLFLRGTAFNLLISFLFVLFFLFGAVAATQRGRRLHGGARPLWLARRGWLPVSVLILLALSVSSF SSGFVLRWLERKLENPLLWIEYRHQMLVRYLHLSGEDTSDAPGIWLRRVRLEGRTLVFVYRVRMEAETASEDTLQHHAMA DFRQHCHERGVRQFGMKVMYVYQVLQEERILVLSRRDCVE >Mature_280_residues MFIKQPASPGADDDVNAEWDEHLRFYQLCGVMAAASSVLLTFMMVLMFPADFKGRAFMLAGSYLGPVTLLLLVGMLRFPR SCSWALFIGFNVFLLYLFLRGTAFNLLISFLFVLFFLFGAVAATQRGRRLHGGARPLWLARRGWLPVSVLILLALSVSSF SSGFVLRWLERKLENPLLWIEYRHQMLVRYLHLSGEDTSDAPGIWLRRVRLEGRTLVFVYRVRMEAETASEDTLQHHAMA DFRQHCHERGVRQFGMKVMYVYQVLQEERILVLSRRDCVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32322; Mature: 32322
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIKQPASPGADDDVNAEWDEHLRFYQLCGVMAAASSVLLTFMMVLMFPADFKGRAFMLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE GSYLGPVTLLLLVGMLRFPRSCSWALFIGFNVFLLYLFLRGTAFNLLISFLFVLFFLFGA CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAATQRGRRLHGGARPLWLARRGWLPVSVLILLALSVSSFSSGFVLRWLERKLENPLLWI HHHHHCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEE EYRHQMLVRYLHLSGEDTSDAPGIWLRRVRLEGRTLVFVYRVRMEAETASEDTLQHHAMA HHHHHHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEEEEEEEHHHHCCHHHHHHHHHHH DFRQHCHERGVRQFGMKVMYVYQVLQEERILVLSRRDCVE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC >Mature Secondary Structure MFIKQPASPGADDDVNAEWDEHLRFYQLCGVMAAASSVLLTFMMVLMFPADFKGRAFMLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE GSYLGPVTLLLLVGMLRFPRSCSWALFIGFNVFLLYLFLRGTAFNLLISFLFVLFFLFGA CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAATQRGRRLHGGARPLWLARRGWLPVSVLILLALSVSSFSSGFVLRWLERKLENPLLWI HHHHHCCCHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEE EYRHQMLVRYLHLSGEDTSDAPGIWLRRVRLEGRTLVFVYRVRMEAETASEDTLQHHAMA HHHHHHHHHHHHHCCCCCCCCCCHHHHHEEECCCEEEEEEEEEHHHHCCHHHHHHHHHHH DFRQHCHERGVRQFGMKVMYVYQVLQEERILVLSRRDCVE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA