Click here to switch to the map view.

The map label for this gene is yafD [C]

Identifier: 238921068

GI number: 238921068

Start: 3076375

End: 3077187

Strand: Reverse

Name: yafD [C]

Synonym: NT01EI_3199

Alternate gene names: 238921068

Gene position: 3077187-3076375 (Counterclockwise)

Preceding gene: 238921069

Following gene: 238921064

Centisome position: 80.72

GC content: 55.97

Gene sequence:

>813_bases
GTGTATTTTGAGCAACAGGCGGTAAACGAGCGCAAAAAGAACTTTGCTATGCGCTACACGGCGGGTATGCCGGCGACGCG
TATTTTCCCCGGTGCTATTCATGAGCTTGGTCAACCCGTGGTGGCGACACATACGCTGCCAAGCGATGATGTCCTACGCA
TCATGGTCTGGAATATTTTCAAGCAGCAACGAGCCGATTGGCTCTCGGTGTTGAAGGAGTATGGGCGGCGTTCGCAGCTC
GTGTTGCTGCAAGAGGCACAGACAACGCCCGAGCTAGTCCATTTCGCCACCAGTAACTATCTCACGGCCGATCAGGTACC
AGCCTTCTCCCTACCGCAGCATCCCTCTGGGGTTATGACGCTGGCAGCGGCTCATCCGATCTATTGTTGCCCGTTGCGCG
AGAAAGAGCCGCTGATCCGCTTGGCGAAGTCGGCGTTGGTGACGGTCTATCCCCTATTCGATGGGCGCCTGTTGATGGTG
GTTAACATCCATGCGGTGAACTTTAGCCTCGGCGTCGAGGTGTATAGTAAGCAGTTAGACCCTATCGGTGAGCAGATCGC
CTTGCATAAGGGGCCGGTGATCATGGCAGGGGATTTTAATGCCTGGAGCAATCGCCGCCTCAATGCGCTACGACGCTTTG
CCTGTGGGATGGAGCTTCGCGAGGTGCATTTTACGAATGATCAGCGTCGTACTGCCTTTGGGCGCCCGTTGGACTTCGTG
TTTTATCGTGCCCTGGGGGTGGTTGAGGCCTCGGTATTAGTCACCCAGGCATCGGATCATAACCCGCTATTGGTCGAGTT
CCGCCCGGAATAG

Upstream 100 bases:

>100_bases
GCTGCTATATCGATTGTATTTCAGGCTGTGCATACCTATAACAGAAGAGTAGACTCGTTAAGATAACGTAGTGTGTGCGC
CATCGAGGCTCGTCTCTACG

Downstream 100 bases:

>100_bases
CCGCGGGCTCTGTGAGCCAATAAAAAAAGCGCCGCGAGGGCGCTTTTTTTTGGACCCTGTACACGATTCTGTGTAAATGC
CTTTTCTCAGAAGTGACCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MYFEQQAVNERKKNFAMRYTAGMPATRIFPGAIHELGQPVVATHTLPSDDVLRIMVWNIFKQQRADWLSVLKEYGRRSQL
VLLQEAQTTPELVHFATSNYLTADQVPAFSLPQHPSGVMTLAAAHPIYCCPLREKEPLIRLAKSALVTVYPLFDGRLLMV
VNIHAVNFSLGVEVYSKQLDPIGEQIALHKGPVIMAGDFNAWSNRRLNALRRFACGMELREVHFTNDQRRTAFGRPLDFV
FYRALGVVEASVLVTQASDHNPLLVEFRPE

Sequences:

>Translated_270_residues
MYFEQQAVNERKKNFAMRYTAGMPATRIFPGAIHELGQPVVATHTLPSDDVLRIMVWNIFKQQRADWLSVLKEYGRRSQL
VLLQEAQTTPELVHFATSNYLTADQVPAFSLPQHPSGVMTLAAAHPIYCCPLREKEPLIRLAKSALVTVYPLFDGRLLMV
VNIHAVNFSLGVEVYSKQLDPIGEQIALHKGPVIMAGDFNAWSNRRLNALRRFACGMELREVHFTNDQRRTAFGRPLDFV
FYRALGVVEASVLVTQASDHNPLLVEFRPE
>Mature_270_residues
MYFEQQAVNERKKNFAMRYTAGMPATRIFPGAIHELGQPVVATHTLPSDDVLRIMVWNIFKQQRADWLSVLKEYGRRSQL
VLLQEAQTTPELVHFATSNYLTADQVPAFSLPQHPSGVMTLAAAHPIYCCPLREKEPLIRLAKSALVTVYPLFDGRLLMV
VNIHAVNFSLGVEVYSKQLDPIGEQIALHKGPVIMAGDFNAWSNRRLNALRRFACGMELREVHFTNDQRRTAFGRPLDFV
FYRALGVVEASVLVTQASDHNPLLVEFRPE

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=260, Percent_Identity=75, Blast_Score=402, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 30574; Mature: 30574

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFEQQAVNERKKNFAMRYTAGMPATRIFPGAIHELGQPVVATHTLPSDDVLRIMVWNIF
CCCCHHHHHHHHHHEEEEEECCCCHHHCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
KQQRADWLSVLKEYGRRSQLVLLQEAQTTPELVHFATSNYLTADQVPAFSLPQHPSGVMT
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHEECCCCCEECCCCCCCCCCCCCCCEEE
LAAAHPIYCCPLREKEPLIRLAKSALVTVYPLFDGRLLMVVNIHAVNFSLGVEVYSKQLD
EECCCCEEEECCCCCCHHHHHHHHHHEEEEEECCCEEEEEEEEEEEEEEEHHHHHHHHCC
PIGEQIALHKGPVIMAGDFNAWSNRRLNALRRFACGMELREVHFTNDQRRTAFGRPLDFV
CCHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHH
FYRALGVVEASVLVTQASDHNPLLVEFRPE
HHHHHHHHHHEEEEEECCCCCCEEEEECCC
>Mature Secondary Structure
MYFEQQAVNERKKNFAMRYTAGMPATRIFPGAIHELGQPVVATHTLPSDDVLRIMVWNIF
CCCCHHHHHHHHHHEEEEEECCCCHHHCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
KQQRADWLSVLKEYGRRSQLVLLQEAQTTPELVHFATSNYLTADQVPAFSLPQHPSGVMT
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHEECCCCCEECCCCCCCCCCCCCCCEEE
LAAAHPIYCCPLREKEPLIRLAKSALVTVYPLFDGRLLMVVNIHAVNFSLGVEVYSKQLD
EECCCCEEEECCCCCCHHHHHHHHHHEEEEEECCCEEEEEEEEEEEEEEEHHHHHHHHCC
PIGEQIALHKGPVIMAGDFNAWSNRRLNALRRFACGMELREVHFTNDQRRTAFGRPLDFV
CCHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHH
FYRALGVVEASVLVTQASDHNPLLVEFRPE
HHHHHHHHHHEEEEEECCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA