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The map label for this gene is rodZ [H]

Identifier: 238921040

GI number: 238921040

Start: 3052491

End: 3053480

Strand: Reverse

Name: rodZ [H]

Synonym: NT01EI_3170

Alternate gene names: 238921040

Gene position: 3053480-3052491 (Counterclockwise)

Preceding gene: 238921041

Following gene: 238921039

Centisome position: 80.1

GC content: 59.8

Gene sequence:

>990_bases
ATGAGCACCGGCGAGCGTCTGCGCCAGGGCCGTGAGCGTTTAGGTCTCACCCAGCAGCAGGTGGCCGAACGCCTGTGCCT
GAAGCTCTCAACCGTACGCAATATTGAAGAAGACAAGGCTCCGGATGGTCTGGTATCGACCTTTGTCCGTGGCTATATCC
GTTCCTATGCCAAGCTGGTGCAGATCCCCGAGCAGGAGATCGCCCCGCTGTTAGCCAAACATCCCCCTGTTCGGGTGGTA
AAAATGGCGTCCATGCAAAGCTTTTCGCTGGGCAAGAAGCGTAAGAAACGCGAAGGTTGGCTGATGACCTTTACCTGGCT
GGTGATCTTTGTGGTGATCGGCATTACCGGGTCTTGGTGGTGGCAGAACCATAAGGCTCAGCAGCAGGATATCGTGGAAA
TGGCCGATGAGTCGTCGGCTCAGTTGGCTAAGCAGCAGGATGCTCAGCCGGTCGAACTATCTGCCCCCGATACTGGCCGT
GCGCCGTCGATGGCCAGCGACAGCGCCGCGCCAGCCGTGACCGAGAGTGCTAAGGTGGGCATGCCGACCACTGTTGCTCC
GATCAACACACAGAGCAGCATGCAGGACACGACAGCTGCGCAGAGCGCTGCTCCAGCGCAGGAGAGTGCTATCGTGGCAC
CGAGCCCGGCTGGCGTGACGCCGCTCTCCGGAACGACGTTGCCTATTGCCGCCGCGAGCGTGGCACCGGGCAGCGTGGGC
GAAGACTCTGAAAGCCCATTGGTGATGCATTTCAGCGCCGACTGCTGGCTGGAAGTACGCGATGCCAGCGGCAAGGTACT
GTTCAGCGGGCTGCAGCGTGCCGGTGGTAAGCTCGATTTGGCCGGTAAGGCACCCTATCGTCTGAAGATCGGGGCGCCGG
CGGCAGTTCAGATCCAGTATCTGGGTAAGCCCGTTGATCTGAGTAGTTTCATCAAGTCAAGTCAGGTTGCCCGTTTTACG
TTAGACGCGCAGTCTGCGGCGGCTAACTGA

Upstream 100 bases:

>100_bases
CGTTATGGCAAGCAACTGGCGCGAAATTTTCCACAATCCCAACAGTACCAGCAGTTCCTAGCGAATGAATACTGAAGCCT
CCCAAGATCAAGCAGTACCG

Downstream 100 bases:

>100_bases
GCTATAGCCAGTGCGGAGAGAAGTCATGCATAGTACTCCATCCCCCATTAAGCGCCGTAAATCGACGCGTATCCATGTCG
GCAGCGTGCCGATCGGTGAC

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSTGERLRQGRERLGLTQQQVAERLCLKLSTVRNIEEDKAPDGLVSTFVRGYIRSYAKLVQIPEQEIAPLLAKHPPVRVV
KMASMQSFSLGKKRKKREGWLMTFTWLVIFVVIGITGSWWWQNHKAQQQDIVEMADESSAQLAKQQDAQPVELSAPDTGR
APSMASDSAAPAVTESAKVGMPTTVAPINTQSSMQDTTAAQSAAPAQESAIVAPSPAGVTPLSGTTLPIAAASVAPGSVG
EDSESPLVMHFSADCWLEVRDASGKVLFSGLQRAGGKLDLAGKAPYRLKIGAPAAVQIQYLGKPVDLSSFIKSSQVARFT
LDAQSAAAN

Sequences:

>Translated_329_residues
MSTGERLRQGRERLGLTQQQVAERLCLKLSTVRNIEEDKAPDGLVSTFVRGYIRSYAKLVQIPEQEIAPLLAKHPPVRVV
KMASMQSFSLGKKRKKREGWLMTFTWLVIFVVIGITGSWWWQNHKAQQQDIVEMADESSAQLAKQQDAQPVELSAPDTGR
APSMASDSAAPAVTESAKVGMPTTVAPINTQSSMQDTTAAQSAAPAQESAIVAPSPAGVTPLSGTTLPIAAASVAPGSVG
EDSESPLVMHFSADCWLEVRDASGKVLFSGLQRAGGKLDLAGKAPYRLKIGAPAAVQIQYLGKPVDLSSFIKSSQVARFT
LDAQSAAAN
>Mature_328_residues
STGERLRQGRERLGLTQQQVAERLCLKLSTVRNIEEDKAPDGLVSTFVRGYIRSYAKLVQIPEQEIAPLLAKHPPVRVVK
MASMQSFSLGKKRKKREGWLMTFTWLVIFVVIGITGSWWWQNHKAQQQDIVEMADESSAQLAKQQDAQPVELSAPDTGRA
PSMASDSAAPAVTESAKVGMPTTVAPINTQSSMQDTTAAQSAAPAQESAIVAPSPAGVTPLSGTTLPIAAASVAPGSVGE
DSESPLVMHFSADCWLEVRDASGKVLFSGLQRAGGKLDLAGKAPYRLKIGAPAAVQIQYLGKPVDLSSFIKSSQVARFTL
DAQSAAAN

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=339, Percent_Identity=53.3923303834808, Blast_Score=341, Evalue=4e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 35111; Mature: 34980

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGERLRQGRERLGLTQQQVAERLCLKLSTVRNIEEDKAPDGLVSTFVRGYIRSYAKLV
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
QIPEQEIAPLLAKHPPVRVVKMASMQSFSLGKKRKKREGWLMTFTWLVIFVVIGITGSWW
HCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
WQNHKAQQQDIVEMADESSAQLAKQQDAQPVELSAPDTGRAPSMASDSAAPAVTESAKVG
CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
MPTTVAPINTQSSMQDTTAAQSAAPAQESAIVAPSPAGVTPLSGTTLPIAAASVAPGSVG
CCCEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
EDSESPLVMHFSADCWLEVRDASGKVLFSGLQRAGGKLDLAGKAPYRLKIGAPAAVQIQY
CCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEEEE
LGKPVDLSSFIKSSQVARFTLDAQSAAAN
CCCCCCHHHHHHCCCEEEEEECCHHCCCC
>Mature Secondary Structure 
STGERLRQGRERLGLTQQQVAERLCLKLSTVRNIEEDKAPDGLVSTFVRGYIRSYAKLV
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHH
QIPEQEIAPLLAKHPPVRVVKMASMQSFSLGKKRKKREGWLMTFTWLVIFVVIGITGSWW
HCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
WQNHKAQQQDIVEMADESSAQLAKQQDAQPVELSAPDTGRAPSMASDSAAPAVTESAKVG
CCCCCHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
MPTTVAPINTQSSMQDTTAAQSAAPAQESAIVAPSPAGVTPLSGTTLPIAAASVAPGSVG
CCCEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
EDSESPLVMHFSADCWLEVRDASGKVLFSGLQRAGGKLDLAGKAPYRLKIGAPAAVQIQY
CCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEEEE
LGKPVDLSSFIKSSQVARFTLDAQSAAAN
CCCCCCHHHHHHCCCEEEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA