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The map label for this gene is nrfC [H]

Identifier: 238921030

GI number: 238921030

Start: 3041867

End: 3042538

Strand: Reverse

Name: nrfC [H]

Synonym: NT01EI_3160

Alternate gene names: 238921030

Gene position: 3042538-3041867 (Counterclockwise)

Preceding gene: 238921031

Following gene: 238921029

Centisome position: 79.81

GC content: 63.84

Gene sequence:

>672_bases
ATGAGTTGCTCCCGTCGACGTTTCATCGCCGGGCTGGGCGTCATGGCGCTCTCCGGCGGCGCCTTGCCACGGGTGGTGGC
CTCCGCCGTGACGTCGCAGGGCGTCCGGCTGGGCATGGTATATGATGAAAACCGCTGCATCGGCTGCACCGCCTGTATGG
AGGCCTGCCGCGAGGTTAATCGGGTGCCCGCTGGCGTATCACGTCTGGAGATCATCCGCAGCGAACCCATCGGCCAGTTT
CCGGCGGTAAAATATCGCTTTTTCCGCCACTCCTGCCAGCACTGTGACGATGCGCCCTGCGTTAACGCCTGCCCGACCGG
CGCATCGTTTCGCGACGCCGCCAGCGGCATTGTCGACGTCGACCCCGATCTGTGCGTCGGCTGTCAGTACTGCATCGCCG
CCTGTCCTTACCGGGTGCGTTTTATCCACCCGGTCAGCAGGACGGCGGATAAGTGCGATTTCTGTCGTAAAACCAACCTG
AAGGCGGGTAAGGAGCCCGCCTGTGTGCTGGCCTGTCCGACCCGGGCGCTCACCTTTGGCGATCTCGACGATCCCGCCAG
CGCGGTGAGCCGTCTGCTGCGCGAACAGCCGAGCTACCGCTACAAGCTGGCGCTGGGCACCCGCCCGAAACTGTATCGTA
TTCCGTTCCGCTACGGGGAGGTGAATTCATGA

Upstream 100 bases:

>100_bases
GCGTCGTGCTGTGCGTAGACTGTCACCGCCAGCAGCAGGATAACCCGGCGTTCGATCCGGCAGCGGTGACGCTGAAAATG
CCGGGTAAGGAGCTGCGGCC

Downstream 100 bases:

>100_bases
CATCGCCGTTTCATTTTCCGTCGCTGGTCTGGGATTGGCCGATCGCCATCGATCTGTTTCTGGTCAGCGTCTCAGCCGGT
CTGGTTGCACTGGCGGTCAT

Product: cytochrome c nitrite reductase, Fe-S protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSCSRRRFIAGLGVMALSGGALPRVVASAVTSQGVRLGMVYDENRCIGCTACMEACREVNRVPAGVSRLEIIRSEPIGQF
PAVKYRFFRHSCQHCDDAPCVNACPTGASFRDAASGIVDVDPDLCVGCQYCIAACPYRVRFIHPVSRTADKCDFCRKTNL
KAGKEPACVLACPTRALTFGDLDDPASAVSRLLREQPSYRYKLALGTRPKLYRIPFRYGEVNS

Sequences:

>Translated_223_residues
MSCSRRRFIAGLGVMALSGGALPRVVASAVTSQGVRLGMVYDENRCIGCTACMEACREVNRVPAGVSRLEIIRSEPIGQF
PAVKYRFFRHSCQHCDDAPCVNACPTGASFRDAASGIVDVDPDLCVGCQYCIAACPYRVRFIHPVSRTADKCDFCRKTNL
KAGKEPACVLACPTRALTFGDLDDPASAVSRLLREQPSYRYKLALGTRPKLYRIPFRYGEVNS
>Mature_222_residues
SCSRRRFIAGLGVMALSGGALPRVVASAVTSQGVRLGMVYDENRCIGCTACMEACREVNRVPAGVSRLEIIRSEPIGQFP
AVKYRFFRHSCQHCDDAPCVNACPTGASFRDAASGIVDVDPDLCVGCQYCIAACPYRVRFIHPVSRTADKCDFCRKTNLK
AGKEPACVLACPTRALTFGDLDDPASAVSRLLREQPSYRYKLALGTRPKLYRIPFRYGEVNS

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=223, Percent_Identity=75.7847533632287, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI226510944, Length=220, Percent_Identity=45.4545454545455, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1789370, Length=255, Percent_Identity=32.156862745098, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1787749, Length=168, Percent_Identity=32.7380952380952, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1790326, Length=184, Percent_Identity=30.9782608695652, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1787872, Length=157, Percent_Identity=35.031847133758, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787122, Length=157, Percent_Identity=35.031847133758, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789067, Length=167, Percent_Identity=32.9341317365269, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787740, Length=114, Percent_Identity=32.4561403508772, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788811, Length=194, Percent_Identity=30.9278350515464, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082180, Length=169, Percent_Identity=32.5443786982249, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=165, Percent_Identity=32.7272727272727, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787478, Length=120, Percent_Identity=32.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787963, Length=155, Percent_Identity=28.3870967741935, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082179, Length=152, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789079, Length=193, Percent_Identity=29.0155440414508, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24398; Mature: 24267

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCSRRRFIAGLGVMALSGGALPRVVASAVTSQGVRLGMVYDENRCIGCTACMEACREVN
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHH
RVPAGVSRLEIIRSEPIGQFPAVKYRFFRHSCQHCDDAPCVNACPTGASFRDAASGIVDV
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEC
DPDLCVGCQYCIAACPYRVRFIHPVSRTADKCDFCRKTNLKAGKEPACVLACPTRALTFG
CCHHHHHHHHHHHHCCEEEEEECCHHHCHHHHHHHHHCCCCCCCCCCEEEECCCCEEECC
DLDDPASAVSRLLREQPSYRYKLALGTRPKLYRIPFRYGEVNS
CCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
SCSRRRFIAGLGVMALSGGALPRVVASAVTSQGVRLGMVYDENRCIGCTACMEACREVN
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCCEEHHHHHHHHHHHH
RVPAGVSRLEIIRSEPIGQFPAVKYRFFRHSCQHCDDAPCVNACPTGASFRDAASGIVDV
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEC
DPDLCVGCQYCIAACPYRVRFIHPVSRTADKCDFCRKTNLKAGKEPACVLACPTRALTFG
CCHHHHHHHHHHHHCCEEEEEECCHHHCHHHHHHHHHCCCCCCCCCCEEEECCCCEEECC
DLDDPASAVSRLLREQPSYRYKLALGTRPKLYRIPFRYGEVNS
CCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]