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The map label for this gene is hpmB [H]

Identifier: 238920930

GI number: 238920930

Start: 2952548

End: 2954287

Strand: Reverse

Name: hpmB [H]

Synonym: NT01EI_3058

Alternate gene names: 238920930

Gene position: 2954287-2952548 (Counterclockwise)

Preceding gene: 238920931

Following gene: 238920929

Centisome position: 77.49

GC content: 60.92

Gene sequence:

>1740_bases
ATGCAGGGAAGACTCAGGCCGCGCTTATCAGTCCGGTCGCTATGGCTGGGGATACTGGGTGGTTGGACGGTGCCGGGTGT
ACTGGCGGCACCAGGGGAGGAAAGCCGACTGCAACAGGATGCCGCCCGGCAGTTTCAGCAGCAGGAGCTGCAGCAAAAAG
CCCGCAATGATGCCCTGACGCCAAAAGCGCCGGACATCCGCCTTTCTGAGAACGCACCCTCTCCCTCTCATCTGATCTTT
CCTGAAGAAACGCCCTGCTTTGCGATTAACCAGGTAACGCTGACCGGGCAGGATGCCCTGCCGCACTGGATTCCGCTCAC
GCGTCTGGCGAATCAGGCTGTGGGGCACTGCGTGGGGGTAAAGGGCATCAATCTATTGATGAGTGCGCTGCAAAACCGGC
TGATCAACCATGGGTGGGTGACATCCCGGGTGCTGGCACCACAACAGGACCTGAGCCGTGGGGTGCTGCAGCTGCGTATC
GTTCCGGGGATCGTGCGGGATGTGCAGCTGACGCCTTCATCGTCATCCCGGTTCAGCCTGTATTCCGCCATGCCAGCCCG
TCGAGGCAACCTGCTGGACGTGCGGGATATTGAACAGGGGCTGGAGAATCTGCAGCGGCTGCCGACGGTGACCGCCCGGA
TGGCCCTCCACCCGGGTGAGGCACCGGGGGAAAGCGATATTCTGATAGAGCGCACCCAGTCACGCTTCTGGCGTGTCGGT
GCCTGGGTCGATGACACCGGCACCCGGGATACCGGTCGTTACCAGGGCGGCGTGATGCTGGCGCTGGATAATCCGACCTC
GTTTTCCGACCTGCTTTACGTCACTGCCAGCCGGGACCTGGGGTTTACCGGCGGGAAAAGCAACAAAAGCCTGTCCGGTC
ACTATTCGGTGCCGTTTGGTTACTGGCTGCTGGGCATCACCGCCAGTGATTATGACTATCATCAGACCGTTGCGGGGCGC
AATGCCGATATCCTGTATGCGGGTAAAAGCCGTTCGCTGGATGTGCAGCTCAGCCGCGTGATGCATCGTAACGCCACCTC
AAAAACCATCGCCACCTATGACGTACTGGTGCGCGAAACCCGCAATTTTATCAGTAACGTTGAAATCGGTGACCAGCAGC
GGCGTACCAGCGCCTGGCGGCTGGGGTTAACCCACCATCATTATCTGGGCGGGGCAACGCTGGATGTGGGGGCGAGTTAT
CAGCGCGGTACGCGCTGGTTCGGCGCTCTGCCGGCACCGGAAGAGCAGTGGGACGACTATGGTGGCGTGACCGCGCTATC
AAAAATCCTCAGTTGGAATGCGTCGGTCACTGTGCCCTTTACGCTCGCCGGGCAGGCGTTCAGCTGGAATACCACCTGGC
GACGACAAATGAGCAATACGCCGCTCACGCCGCAGGATGAGTTCTCCATTGGCAACCGCTGGACGGTGCGCGGCTTTGAT
GGTGAACGTACGCTCAGCGCCACCAACGGCTGGACGGTACAGAATACGCTGGCCTGGCGCACACCGTTGCCTGCGCAGGA
GCTGTATCTGGGGGCGGACTACGCGGAGGTGAGCGGCAACAGCACCACGCTGAGCGACCTGACGGGCCGTCATCTGGCCG
GTTCGGTTCTGGGGGTACGCGGTGCCGTCTCCTCCGTCGGTGTCAGTTATGACCTGTTTACCGGGCTCCCCCTCTCTAAA
CCGACGGGGTTCAAAACCGACCCGGTGACGTTTGGCTTTAGCCTGAGCTGGAACTATTAA

Upstream 100 bases:

>100_bases
TGGTCAGTTATGCACCTTGTTTGGTTGTTTTTTGATCAATGACTGTGGATAATACACGCTTGCTTACATTTTATCACAGT
GACTATTTCAGGGATTATAC

Downstream 100 bases:

>100_bases
CCCATTATGACGAGCGGCGACCCGCTTGGGTCTGTCACCTAAGATACCCGGGGAGCACCTGATCATGAACAAACACCTCT
ACCGCATTGTTTTTAGCCAT

Product: polypeptide-transport-associated domain protein ShlB-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MQGRLRPRLSVRSLWLGILGGWTVPGVLAAPGEESRLQQDAARQFQQQELQQKARNDALTPKAPDIRLSENAPSPSHLIF
PEETPCFAINQVTLTGQDALPHWIPLTRLANQAVGHCVGVKGINLLMSALQNRLINHGWVTSRVLAPQQDLSRGVLQLRI
VPGIVRDVQLTPSSSSRFSLYSAMPARRGNLLDVRDIEQGLENLQRLPTVTARMALHPGEAPGESDILIERTQSRFWRVG
AWVDDTGTRDTGRYQGGVMLALDNPTSFSDLLYVTASRDLGFTGGKSNKSLSGHYSVPFGYWLLGITASDYDYHQTVAGR
NADILYAGKSRSLDVQLSRVMHRNATSKTIATYDVLVRETRNFISNVEIGDQQRRTSAWRLGLTHHHYLGGATLDVGASY
QRGTRWFGALPAPEEQWDDYGGVTALSKILSWNASVTVPFTLAGQAFSWNTTWRRQMSNTPLTPQDEFSIGNRWTVRGFD
GERTLSATNGWTVQNTLAWRTPLPAQELYLGADYAEVSGNSTTLSDLTGRHLAGSVLGVRGAVSSVGVSYDLFTGLPLSK
PTGFKTDPVTFGFSLSWNY

Sequences:

>Translated_579_residues
MQGRLRPRLSVRSLWLGILGGWTVPGVLAAPGEESRLQQDAARQFQQQELQQKARNDALTPKAPDIRLSENAPSPSHLIF
PEETPCFAINQVTLTGQDALPHWIPLTRLANQAVGHCVGVKGINLLMSALQNRLINHGWVTSRVLAPQQDLSRGVLQLRI
VPGIVRDVQLTPSSSSRFSLYSAMPARRGNLLDVRDIEQGLENLQRLPTVTARMALHPGEAPGESDILIERTQSRFWRVG
AWVDDTGTRDTGRYQGGVMLALDNPTSFSDLLYVTASRDLGFTGGKSNKSLSGHYSVPFGYWLLGITASDYDYHQTVAGR
NADILYAGKSRSLDVQLSRVMHRNATSKTIATYDVLVRETRNFISNVEIGDQQRRTSAWRLGLTHHHYLGGATLDVGASY
QRGTRWFGALPAPEEQWDDYGGVTALSKILSWNASVTVPFTLAGQAFSWNTTWRRQMSNTPLTPQDEFSIGNRWTVRGFD
GERTLSATNGWTVQNTLAWRTPLPAQELYLGADYAEVSGNSTTLSDLTGRHLAGSVLGVRGAVSSVGVSYDLFTGLPLSK
PTGFKTDPVTFGFSLSWNY
>Mature_579_residues
MQGRLRPRLSVRSLWLGILGGWTVPGVLAAPGEESRLQQDAARQFQQQELQQKARNDALTPKAPDIRLSENAPSPSHLIF
PEETPCFAINQVTLTGQDALPHWIPLTRLANQAVGHCVGVKGINLLMSALQNRLINHGWVTSRVLAPQQDLSRGVLQLRI
VPGIVRDVQLTPSSSSRFSLYSAMPARRGNLLDVRDIEQGLENLQRLPTVTARMALHPGEAPGESDILIERTQSRFWRVG
AWVDDTGTRDTGRYQGGVMLALDNPTSFSDLLYVTASRDLGFTGGKSNKSLSGHYSVPFGYWLLGITASDYDYHQTVAGR
NADILYAGKSRSLDVQLSRVMHRNATSKTIATYDVLVRETRNFISNVEIGDQQRRTSAWRLGLTHHHYLGGATLDVGASY
QRGTRWFGALPAPEEQWDDYGGVTALSKILSWNASVTVPFTLAGQAFSWNTTWRRQMSNTPLTPQDEFSIGNRWTVRGFD
GERTLSATNGWTVQNTLAWRTPLPAQELYLGADYAEVSGNSTTLSDLTGRHLAGSVLGVRGAVSSVGVSYDLFTGLPLSK
PTGFKTDPVTFGFSLSWNY

Specific function: Probable member of a two partner secretion pathway (TPS) in which it mediates the secretion of hemolysin [H]

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tpsB (TC 1.B.20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005565
- InterPro:   IPR013686 [H]

Pfam domain/function: PF08479 POTRA_2; PF03865 ShlB [H]

EC number: NA

Molecular weight: Translated: 63781; Mature: 63781

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRLRPRLSVRSLWLGILGGWTVPGVLAAPGEESRLQQDAARQFQQQELQQKARNDALT
CCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PKAPDIRLSENAPSPSHLIFPEETPCFAINQVTLTGQDALPHWIPLTRLANQAVGHCVGV
CCCCCEEECCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHEECH
KGINLLMSALQNRLINHGWVTSRVLAPQQDLSRGVLQLRIVPGIVRDVQLTPSSSSRFSL
HHHHHHHHHHHHHHHCCCCHHHEECCCHHHHHCCEEEEEEECCCEEEEEECCCCCCCEEE
YSAMPARRGNLLDVRDIEQGLENLQRLPTVTARMALHPGEAPGESDILIERTQSRFWRVG
EECCCCCCCCEECHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCEEEEECCCCEEEEE
AWVDDTGTRDTGRYQGGVMLALDNPTSFSDLLYVTASRDLGFTGGKSNKSLSGHYSVPFG
CEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCE
YWLLGITASDYDYHQTVAGRNADILYAGKSRSLDVQLSRVMHRNATSKTIATYDVLVRET
EEEEEEEECCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
RNFISNVEIGDQQRRTSAWRLGLTHHHYLGGATLDVGASYQRGTRWFGALPAPEEQWDDY
HHHHHCCCCCCHHHHHHHHEECCCEEEECCCCEEECCCCCCCCCEEECCCCCCHHHHCCC
GGVTALSKILSWNASVTVPFTLAGQAFSWNTTWRRQMSNTPLTPQDEFSIGNRWTVRGFD
CCHHHHHHHHHCCCEEEEEEEECCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCC
GERTLSATNGWTVQNTLAWRTPLPAQELYLGADYAEVSGNSTTLSDLTGRHLAGSVLGVR
CCEEEECCCCEEEECEEEECCCCCHHHHEECCCHHCCCCCCCCHHHCCCCHHHHHHHHHH
GAVSSVGVSYDLFTGLPLSKPTGFKTDPVTFGFSLSWNY
HHHHHCCCEEEHHCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MQGRLRPRLSVRSLWLGILGGWTVPGVLAAPGEESRLQQDAARQFQQQELQQKARNDALT
CCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PKAPDIRLSENAPSPSHLIFPEETPCFAINQVTLTGQDALPHWIPLTRLANQAVGHCVGV
CCCCCEEECCCCCCCCEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHEECH
KGINLLMSALQNRLINHGWVTSRVLAPQQDLSRGVLQLRIVPGIVRDVQLTPSSSSRFSL
HHHHHHHHHHHHHHHCCCCHHHEECCCHHHHHCCEEEEEEECCCEEEEEECCCCCCCEEE
YSAMPARRGNLLDVRDIEQGLENLQRLPTVTARMALHPGEAPGESDILIERTQSRFWRVG
EECCCCCCCCEECHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCEEEEECCCCEEEEE
AWVDDTGTRDTGRYQGGVMLALDNPTSFSDLLYVTASRDLGFTGGKSNKSLSGHYSVPFG
CEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCE
YWLLGITASDYDYHQTVAGRNADILYAGKSRSLDVQLSRVMHRNATSKTIATYDVLVRET
EEEEEEEECCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
RNFISNVEIGDQQRRTSAWRLGLTHHHYLGGATLDVGASYQRGTRWFGALPAPEEQWDDY
HHHHHCCCCCCHHHHHHHHEECCCEEEECCCCEEECCCCCCCCCEEECCCCCCHHHHCCC
GGVTALSKILSWNASVTVPFTLAGQAFSWNTTWRRQMSNTPLTPQDEFSIGNRWTVRGFD
CCHHHHHHHHHCCCEEEEEEEECCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCC
GERTLSATNGWTVQNTLAWRTPLPAQELYLGADYAEVSGNSTTLSDLTGRHLAGSVLGVR
CCEEEECCCCEEEECEEEECCCCCHHHHEECCCHHCCCCCCCCHHHCCCCHHHHHHHHHH
GAVSSVGVSYDLFTGLPLSKPTGFKTDPVTFGFSLSWNY
HHHHHCCCEEEHHCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2407716 [H]