| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920920
Identifier: 238920920
GI number: 238920920
Start: 2934610
End: 2934969
Strand: Reverse
Name: 238920920
Synonym: NT01EI_3048
Alternate gene names: NA
Gene position: 2934969-2934610 (Counterclockwise)
Preceding gene: 238920921
Following gene: 238920919
Centisome position: 76.99
GC content: 55.56
Gene sequence:
>360_bases GTGGCTGATGCCAATCATAATGGACGCGCCTGCGGTATGACGCAGTCAGCCGTCTCTGACGGCGCGATCATCGTGCATGA TCGGGCTAACCAGCAGCAGAATGTCGACACGCTGGCGCGTGATATTATCCGTGTATACTGGTCCTATCCCCTACCTTTAA CAAGGATAAAACGCAGGCGTGCCTGCTGCAGGTCTCACCTGATTGGTGAGATAGGTAATCAGGTGGCAGGTATTGCGCGG AGACAGGGTGAGATTGCCGGTGAGAAAACGAAACGTGATCCGGCAGCCCTGATTCAGGCCCATACCGAGCCGGCAGCTAC CGACAAACCGCTCATCGGGCAGAATATGGCTGGTGTATAG
Upstream 100 bases:
>100_bases GTATTTGGCTTTGAAGAATGTGGATCACAAAAAGACCCAACCGGGCTGTGCAATTAGCGGCCTGAATTTCGGCATTCTGG GTTACTTGGCTGAATTCTGT
Downstream 100 bases:
>100_bases CACCGGCAGGGCGTCTTCGGGAATGGGAAAATACCAACAGGGTATTCAGGCGGCCACTGCGGCGACATCCCATATATTGC AGATGTGGTGAAAGCGATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MADANHNGRACGMTQSAVSDGAIIVHDRANQQQNVDTLARDIIRVYWSYPLPLTRIKRRRACCRSHLIGEIGNQVAGIAR RQGEIAGEKTKRDPAALIQAHTEPAATDKPLIGQNMAGV
Sequences:
>Translated_119_residues MADANHNGRACGMTQSAVSDGAIIVHDRANQQQNVDTLARDIIRVYWSYPLPLTRIKRRRACCRSHLIGEIGNQVAGIAR RQGEIAGEKTKRDPAALIQAHTEPAATDKPLIGQNMAGV >Mature_118_residues ADANHNGRACGMTQSAVSDGAIIVHDRANQQQNVDTLARDIIRVYWSYPLPLTRIKRRRACCRSHLIGEIGNQVAGIARR QGEIAGEKTKRDPAALIQAHTEPAATDKPLIGQNMAGV
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12939; Mature: 12808
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADANHNGRACGMTQSAVSDGAIIVHDRANQQQNVDTLARDIIRVYWSYPLPLTRIKRRR CCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH ACCRSHLIGEIGNQVAGIARRQGEIAGEKTKRDPAALIQAHTEPAATDKPLIGQNMAGV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ADANHNGRACGMTQSAVSDGAIIVHDRANQQQNVDTLARDIIRVYWSYPLPLTRIKRRR CCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH ACCRSHLIGEIGNQVAGIARRQGEIAGEKTKRDPAALIQAHTEPAATDKPLIGQNMAGV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA